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Cluster: HRGMv2_2532_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2532_3 HRGMv2_2532_3_107 111199 113157 - 3.A.1.5.19
NULL(UNKNOWN) HRGMv2_2532_3 HRGMv2_2532_3_108 113195 113296 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2532_3 HRGMv2_2532_3_109 113362 115329 - 3.A.1.5.19
CAZyme HRGMv2_2532_3 HRGMv2_2532_3_110 115713 117323 - GH13_31
pfam HRGMv2_2532_3 HRGMv2_2532_3_111 117476 118960 + DUF1846 | DUF1846_C
pfam HRGMv2_2532_3 HRGMv2_2532_3_112 119055 119537 + LuxS
TC HRGMv2_2532_3 HRGMv2_2532_3_113 119600 121705 - 3.A.9.1.2
Gene ID: HRGMv2_2532_3_107
Type: TC
Location: 111199 - 113157 (-)
Gene ID: HRGMv2_2532_3_108
Type:
Location: 113195 - 113296 (-)
Gene ID: HRGMv2_2532_3_109
Type: TC
Location: 113362 - 115329 (-)
Gene ID: HRGMv2_2532_3_110
Type: CAZyme
Location: 115713 - 117323 (-)
Gene ID: HRGMv2_2532_3_111
Type: pfam
Location: 117476 - 118960 (+)
Gene ID: HRGMv2_2532_3_112
Type: pfam
Location: 119055 - 119537 (+)
Gene ID: HRGMv2_2532_3_113
Type: TC
Location: 119600 - 121705 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2532_3_113 vegetarian > vegan 1.46645 0.00933

🧭 Explore Read Mapping of CGC

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