Cluster: HRGMv2_2532_CGC21
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2532
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2532_36 | HRGMv2_2532_36_3 | 1033 | 3228 | - | GT51 |
| pfam | HRGMv2_2532_36 | HRGMv2_2532_36_4 | 3315 | 4190 | + | PseudoU_synth_2 |
| pfam | HRGMv2_2532_36 | HRGMv2_2532_36_5 | 4257 | 5264 | - | Gp_dh_N | Gp_dh_C |
| TC | HRGMv2_2532_36 | HRGMv2_2532_36_6 | 5441 | 6700 | - | 3.A.1.122.13 |
| TC | HRGMv2_2532_36 | HRGMv2_2532_36_7 | 6711 | 7394 | - | 3.A.1.122.14 |
Gene ID: HRGMv2_2532_36_3
Type: CAZyme
Location: 1033 - 3228 (-)
Type: CAZyme
Location: 1033 - 3228 (-)
Gene ID: HRGMv2_2532_36_4
Type: pfam
Location: 3315 - 4190 (+)
Type: pfam
Location: 3315 - 4190 (+)
Gene ID: HRGMv2_2532_36_5
Type: pfam
Location: 4257 - 5264 (-)
Type: pfam
Location: 4257 - 5264 (-)
Gene ID: HRGMv2_2532_36_6
Type: TC
Location: 5441 - 6700 (-)
Type: TC
Location: 5441 - 6700 (-)
Gene ID: HRGMv2_2532_36_7
Type: TC
Location: 6711 - 7394 (-)
Type: TC
Location: 6711 - 7394 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus pseudopneumoniae_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.