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Cluster: HRGMv2_2532_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2532_3 HRGMv2_2532_3_16 16780 18663 - 4.A.1.2.12
CAZyme HRGMv2_2532_3 HRGMv2_2532_3_17 19043 20497 + GH32
TF HRGMv2_2532_3 HRGMv2_2532_3_18 20478 21443 + LacI
TC HRGMv2_2532_3 HRGMv2_2532_3_19 21574 22848 - 2.A.6.6.11
pfam HRGMv2_2532_3 HRGMv2_2532_3_20 22848 24020 - Chal_sti_synt_N | HMG_CoA_synt_N | HMG_CoA_synt_C | HMG_CoA_synt_C
pfam HRGMv2_2532_3 HRGMv2_2532_3_21 24134 24583 - ThrE_2
TC HRGMv2_2532_3 HRGMv2_2532_3_22 24585 25343 - 2.A.79.1.5
TC HRGMv2_2532_3 HRGMv2_2532_3_23 25438 27330 - 9.B.106.2.2
Gene ID: HRGMv2_2532_3_16
Type: TC
Location: 16780 - 18663 (-)
Gene ID: HRGMv2_2532_3_17
Type: CAZyme
Location: 19043 - 20497 (+)
Gene ID: HRGMv2_2532_3_18
Type: TF
Location: 20478 - 21443 (+)
Gene ID: HRGMv2_2532_3_19
Type: TC
Location: 21574 - 22848 (-)
Gene ID: HRGMv2_2532_3_20
Type: pfam
Location: 22848 - 24020 (-)
Gene ID: HRGMv2_2532_3_21
Type: pfam
Location: 24134 - 24583 (-)
Gene ID: HRGMv2_2532_3_22
Type: TC
Location: 24585 - 25343 (-)
Gene ID: HRGMv2_2532_3_23
Type: TC
Location: 25438 - 27330 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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