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Cluster: HRGMv2_2532_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2532_22 HRGMv2_2532_22_3 1955 2647 + 3.A.1.140.1
pfam HRGMv2_2532_22 HRGMv2_2532_22_4 2640 3566 + FtsX | FtsX_ECD
TC HRGMv2_2532_22 HRGMv2_2532_22_5 3751 5931 + 4.A.1.1.11
pfam HRGMv2_2532_22 HRGMv2_2532_22_6 5983 6798 + Exo_endo_phos
TC HRGMv2_2532_22 HRGMv2_2532_22_7 6939 8282 + 3.A.18.1.1
sulfatase HRGMv2_2532_22 HRGMv2_2532_22_8 8931 10121 + S1_2
pfam HRGMv2_2532_22 HRGMv2_2532_22_9 10198 10593 + HTH_Tnp_4
CAZyme HRGMv2_2532_22 HRGMv2_2532_22_10 11072 12463 + CE4
TC HRGMv2_2532_22 HRGMv2_2532_22_11 12542 13384 + 8.A.5.1.4
Gene ID: HRGMv2_2532_22_3
Type: TC
Location: 1955 - 2647 (+)
Gene ID: HRGMv2_2532_22_4
Type: pfam
Location: 2640 - 3566 (+)
Gene ID: HRGMv2_2532_22_5
Type: TC
Location: 3751 - 5931 (+)
Gene ID: HRGMv2_2532_22_6
Type: pfam
Location: 5983 - 6798 (+)
Gene ID: HRGMv2_2532_22_7
Type: TC
Location: 6939 - 8282 (+)
Gene ID: HRGMv2_2532_22_8
Type: sulfatase
Location: 8931 - 10121 (+)
Gene ID: HRGMv2_2532_22_9
Type: pfam
Location: 10198 - 10593 (+)
Gene ID: HRGMv2_2532_22_10
Type: CAZyme
Location: 11072 - 12463 (+)
Gene ID: HRGMv2_2532_22_11
Type: TC
Location: 12542 - 13384 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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