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Cluster: HRGMv2_2532_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2532_18 HRGMv2_2532_18_2 1099 1800 + 3.A.1.122.7
pfam HRGMv2_2532_18 HRGMv2_2532_18_3 1802 4510 + FtsX | FtsX | MacB_PCD
pfam HRGMv2_2532_18 HRGMv2_2532_18_4 4891 5382 - AhpC-TSA | Redoxin
TC HRGMv2_2532_18 HRGMv2_2532_18_5 5503 6432 - 3.A.1.15.14
TC HRGMv2_2532_18 HRGMv2_2532_18_6 6464 7312 - 3.A.1.15.14
TC HRGMv2_2532_18 HRGMv2_2532_18_7 7309 8031 - 3.A.1.15.14
peptidase HRGMv2_2532_18 HRGMv2_2532_18_8 8211 10103 + M13.005
CAZyme HRGMv2_2532_18 HRGMv2_2532_18_9 10569 11447 + GT2
CAZyme HRGMv2_2532_18 HRGMv2_2532_18_10 11466 12458 + GT113
CAZyme HRGMv2_2532_18 HRGMv2_2532_18_11 12471 14219 + GT101 | GT2
CAZyme HRGMv2_2532_18 HRGMv2_2532_18_12 14219 15094 + GT2
pfam HRGMv2_2532_18 HRGMv2_2532_18_13 15339 17681 + Gram_pos_anchor | KxYKxGKxW_sig
pfam HRGMv2_2532_18 HRGMv2_2532_18_14 17877 19049 + SecY
TC HRGMv2_2532_18 HRGMv2_2532_18_15 19063 20646 + 3.A.5.10.1
TC HRGMv2_2532_18 HRGMv2_2532_18_16 20657 22240 + 3.A.5.10.1
pfam HRGMv2_2532_18 HRGMv2_2532_18_17 22250 22792 + Sec-ASP3
TC HRGMv2_2532_18 HRGMv2_2532_18_18 22800 25196 + 3.A.5.10.1
CAZyme HRGMv2_2532_18 HRGMv2_2532_18_19 25206 26720 + GT4
Gene ID: HRGMv2_2532_18_2
Type: TC
Location: 1099 - 1800 (+)
Gene ID: HRGMv2_2532_18_3
Type: pfam
Location: 1802 - 4510 (+)
Gene ID: HRGMv2_2532_18_4
Type: pfam
Location: 4891 - 5382 (-)
Gene ID: HRGMv2_2532_18_5
Type: TC
Location: 5503 - 6432 (-)
Gene ID: HRGMv2_2532_18_6
Type: TC
Location: 6464 - 7312 (-)
Gene ID: HRGMv2_2532_18_7
Type: TC
Location: 7309 - 8031 (-)
Gene ID: HRGMv2_2532_18_8
Type: peptidase
Location: 8211 - 10103 (+)
Gene ID: HRGMv2_2532_18_9
Type: CAZyme
Location: 10569 - 11447 (+)
Gene ID: HRGMv2_2532_18_10
Type: CAZyme
Location: 11466 - 12458 (+)
Gene ID: HRGMv2_2532_18_11
Type: CAZyme
Location: 12471 - 14219 (+)
Gene ID: HRGMv2_2532_18_12
Type: CAZyme
Location: 14219 - 15094 (+)
Gene ID: HRGMv2_2532_18_13
Type: pfam
Location: 15339 - 17681 (+)
Gene ID: HRGMv2_2532_18_14
Type: pfam
Location: 17877 - 19049 (+)
Gene ID: HRGMv2_2532_18_15
Type: TC
Location: 19063 - 20646 (+)
Gene ID: HRGMv2_2532_18_16
Type: TC
Location: 20657 - 22240 (+)
Gene ID: HRGMv2_2532_18_17
Type: pfam
Location: 22250 - 22792 (+)
Gene ID: HRGMv2_2532_18_18
Type: TC
Location: 22800 - 25196 (+)
Gene ID: HRGMv2_2532_18_19
Type: CAZyme
Location: 25206 - 26720 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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