Cluster: HRGMv2_2532_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2532
- CGC Family ID: CGCFAM_02151
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2532_16 | HRGMv2_2532_16_25 | 22066 | 23640 | + | 3.A.1.201.19 |
| pfam | HRGMv2_2532_16 | HRGMv2_2532_16_26 | 23891 | 24151 | + | MtN3_slv |
| CAZyme | HRGMv2_2532_16 | HRGMv2_2532_16_27 | 24282 | 25721 | + | GH1 |
| pfam | HRGMv2_2532_16 | HRGMv2_2532_16_28 | 25842 | 26786 | + | PMI_typeI_cat | MPI_cupin_dom |
| TC | HRGMv2_2532_16 | HRGMv2_2532_16_29 | 26829 | 28169 | - | 2.A.22.5.3 |
Gene ID: HRGMv2_2532_16_25
Type: TC
Location: 22066 - 23640 (+)
Type: TC
Location: 22066 - 23640 (+)
Gene ID: HRGMv2_2532_16_26
Type: pfam
Location: 23891 - 24151 (+)
Type: pfam
Location: 23891 - 24151 (+)
Gene ID: HRGMv2_2532_16_27
Type: CAZyme
Location: 24282 - 25721 (+)
Type: CAZyme
Location: 24282 - 25721 (+)
Gene ID: HRGMv2_2532_16_28
Type: pfam
Location: 25842 - 26786 (+)
Type: pfam
Location: 25842 - 26786 (+)
Gene ID: HRGMv2_2532_16_29
Type: TC
Location: 26829 - 28169 (-)
Type: TC
Location: 26829 - 28169 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus pseudopneumoniae_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.