Cluster: HRGMv2_2532_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2532
- CGC Family ID: CGCFAM_03092
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2532_12 | HRGMv2_2532_12_43 | 43151 | 44401 | + | 2.A.23.1.2 |
| NULL(UNKNOWN) | HRGMv2_2532_12 | HRGMv2_2532_12_44 | 44416 | 45354 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2532_12 | HRGMv2_2532_12_45 | 45658 | 46422 | + | PNP_UDP_1 |
| TC | HRGMv2_2532_12 | HRGMv2_2532_12_46 | 46456 | 47835 | + | 2.A.38.4.3 |
| TC | HRGMv2_2532_12 | HRGMv2_2532_12_47 | 47849 | 48514 | + | 2.A.38.4.6 |
| CAZyme | HRGMv2_2532_12 | HRGMv2_2532_12_48 | 48901 | 49917 | + | GT2 |
Gene ID: HRGMv2_2532_12_43
Type: TC
Location: 43151 - 44401 (+)
Type: TC
Location: 43151 - 44401 (+)
Gene ID: HRGMv2_2532_12_44
Type:
Location: 44416 - 45354 (+)
Type:
Location: 44416 - 45354 (+)
Gene ID: HRGMv2_2532_12_45
Type: pfam
Location: 45658 - 46422 (+)
Type: pfam
Location: 45658 - 46422 (+)
Gene ID: HRGMv2_2532_12_46
Type: TC
Location: 46456 - 47835 (+)
Type: TC
Location: 46456 - 47835 (+)
Gene ID: HRGMv2_2532_12_47
Type: TC
Location: 47849 - 48514 (+)
Type: TC
Location: 47849 - 48514 (+)
Gene ID: HRGMv2_2532_12_48
Type: CAZyme
Location: 48901 - 49917 (+)
Type: CAZyme
Location: 48901 - 49917 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus pseudopneumoniae_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.