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Cluster: HRGMv2_2527_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2527_5 HRGMv2_2527_5_100 99427 100809 + GH1
TC HRGMv2_2527_5 HRGMv2_2527_5_101 100809 102230 + 4.A.3.2.2
TF HRGMv2_2527_5 HRGMv2_2527_5_102 102389 103111 + GntR
CAZyme HRGMv2_2527_5 HRGMv2_2527_5_103 103121 104602 + GH1
pfam HRGMv2_2527_5 HRGMv2_2527_5_104 104699 105109 + DUF3284
TC HRGMv2_2527_5 HRGMv2_2527_5_105 105201 106553 - 4.A.3.2.8
NULL(UNKNOWN) HRGMv2_2527_5 HRGMv2_2527_5_106 106749 107261 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2527_5 HRGMv2_2527_5_107 107360 107728 - 4.A.3.2.8
TC HRGMv2_2527_5 HRGMv2_2527_5_108 107765 108100 - 4.A.3.2.4
TF HRGMv2_2527_5 HRGMv2_2527_5_109 108464 109171 + GntR
CAZyme HRGMv2_2527_5 HRGMv2_2527_5_110 109257 110705 + GH1
Gene ID: HRGMv2_2527_5_100
Type: CAZyme
Location: 99427 - 100809 (+)
Gene ID: HRGMv2_2527_5_101
Type: TC
Location: 100809 - 102230 (+)
Gene ID: HRGMv2_2527_5_102
Type: TF
Location: 102389 - 103111 (+)
Gene ID: HRGMv2_2527_5_103
Type: CAZyme
Location: 103121 - 104602 (+)
Gene ID: HRGMv2_2527_5_104
Type: pfam
Location: 104699 - 105109 (+)
Gene ID: HRGMv2_2527_5_105
Type: TC
Location: 105201 - 106553 (-)
Gene ID: HRGMv2_2527_5_106
Type:
Location: 106749 - 107261 (-)
Gene ID: HRGMv2_2527_5_107
Type: TC
Location: 107360 - 107728 (-)
Gene ID: HRGMv2_2527_5_108
Type: TC
Location: 107765 - 108100 (-)
Gene ID: HRGMv2_2527_5_109
Type: TF
Location: 108464 - 109171 (+)
Gene ID: HRGMv2_2527_5_110
Type: CAZyme
Location: 109257 - 110705 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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