Cluster: HRGMv2_2527_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2527
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2527_27 | HRGMv2_2527_27_44 | 39987 | 41936 | - | 4.A.1.2.12 |
| CAZyme | HRGMv2_2527_27 | HRGMv2_2527_27_45 | 42181 | 43629 | + | GH32 |
| TF | HRGMv2_2527_27 | HRGMv2_2527_27_46 | 43645 | 44631 | + | LacI |
| TF | HRGMv2_2527_27 | HRGMv2_2527_27_47 | 44673 | 45308 | - | 0045030 |
| TC | HRGMv2_2527_27 | HRGMv2_2527_27_48 | 45493 | 47409 | + | 3.A.1.120.6 |
Gene ID: HRGMv2_2527_27_44
Type: TC
Location: 39987 - 41936 (-)
Type: TC
Location: 39987 - 41936 (-)
Gene ID: HRGMv2_2527_27_45
Type: CAZyme
Location: 42181 - 43629 (+)
Type: CAZyme
Location: 42181 - 43629 (+)
Gene ID: HRGMv2_2527_27_46
Type: TF
Location: 43645 - 44631 (+)
Type: TF
Location: 43645 - 44631 (+)
Gene ID: HRGMv2_2527_27_47
Type: TF
Location: 44673 - 45308 (-)
Type: TF
Location: 44673 - 45308 (-)
Gene ID: HRGMv2_2527_27_48
Type: TC
Location: 45493 - 47409 (+)
Type: TC
Location: 45493 - 47409 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus amylovorus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.