Cluster: HRGMv2_2527_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2527
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2527_19 | HRGMv2_2527_19_89 | 90807 | 92864 | - | GT51 |
| pfam | HRGMv2_2527_19 | HRGMv2_2527_19_90 | 92955 | 93812 | + | PseudoU_synth_2 |
| sulfatase | HRGMv2_2527_19 | HRGMv2_2527_19_91 | 93869 | 94912 | - | S1_6 |
| TC | HRGMv2_2527_19 | HRGMv2_2527_19_92 | 95106 | 95858 | + | 1.A.8.2.7 |
| NULL(UNKNOWN) | HRGMv2_2527_19 | HRGMv2_2527_19_93 | 95994 | 96230 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2527_19 | HRGMv2_2527_19_94 | 96295 | 97671 | - | 2.A.1.3.30 |
Gene ID: HRGMv2_2527_19_89
Type: CAZyme
Location: 90807 - 92864 (-)
Type: CAZyme
Location: 90807 - 92864 (-)
Gene ID: HRGMv2_2527_19_90
Type: pfam
Location: 92955 - 93812 (+)
Type: pfam
Location: 92955 - 93812 (+)
Gene ID: HRGMv2_2527_19_91
Type: sulfatase
Location: 93869 - 94912 (-)
Type: sulfatase
Location: 93869 - 94912 (-)
Gene ID: HRGMv2_2527_19_92
Type: TC
Location: 95106 - 95858 (+)
Type: TC
Location: 95106 - 95858 (+)
Gene ID: HRGMv2_2527_19_93
Type:
Location: 95994 - 96230 (+)
Type:
Location: 95994 - 96230 (+)
Gene ID: HRGMv2_2527_19_94
Type: TC
Location: 96295 - 97671 (-)
Type: TC
Location: 96295 - 97671 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus amylovorus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.