Cluster: HRGMv2_2521_CGC22
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2521
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2521_18 | HRGMv2_2521_18_28 | 28218 | 29483 | - | 2.A.1.5.3 |
| CAZyme | HRGMv2_2521_18 | HRGMv2_2521_18_29 | 29489 | 30910 | - | GH32 |
| pfam | HRGMv2_2521_18 | HRGMv2_2521_18_30 | 31383 | 32315 | + | S-methyl_trans |
| TC | HRGMv2_2521_18 | HRGMv2_2521_18_31 | 32308 | 33711 | + | 2.A.3.1.10 |
| NULL(UNKNOWN) | HRGMv2_2521_18 | HRGMv2_2521_18_32 | 33791 | 34048 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2521_18 | HRGMv2_2521_18_33 | 34196 | 34966 | + | CpsB_CapC |
| CAZyme | HRGMv2_2521_18 | HRGMv2_2521_18_34 | 35089 | 35991 | + | GH25 |
Gene ID: HRGMv2_2521_18_28
Type: TC
Location: 28218 - 29483 (-)
Type: TC
Location: 28218 - 29483 (-)
Gene ID: HRGMv2_2521_18_29
Type: CAZyme
Location: 29489 - 30910 (-)
Type: CAZyme
Location: 29489 - 30910 (-)
Gene ID: HRGMv2_2521_18_30
Type: pfam
Location: 31383 - 32315 (+)
Type: pfam
Location: 31383 - 32315 (+)
Gene ID: HRGMv2_2521_18_31
Type: TC
Location: 32308 - 33711 (+)
Type: TC
Location: 32308 - 33711 (+)
Gene ID: HRGMv2_2521_18_32
Type:
Location: 33791 - 34048 (+)
Type:
Location: 33791 - 34048 (+)
Gene ID: HRGMv2_2521_18_33
Type: pfam
Location: 34196 - 34966 (+)
Type: pfam
Location: 34196 - 34966 (+)
Gene ID: HRGMv2_2521_18_34
Type: CAZyme
Location: 35089 - 35991 (+)
Type: CAZyme
Location: 35089 - 35991 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Limosilactobacillus
Species
Limosilactobacillus caviae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.