Cluster: HRGMv2_2520_CGC3
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2520
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2520_2 | HRGMv2_2520_2_59 | 64684 | 65379 | + | 8.A.3.2.3 |
| TC | HRGMv2_2520_2 | HRGMv2_2520_2_60 | 65392 | 66087 | + | 8.A.3.2.2 |
| TC | HRGMv2_2520_2 | HRGMv2_2520_2_61 | 66107 | 67480 | + | 9.B.18.1.2 |
| pfam | HRGMv2_2520_2 | HRGMv2_2520_2_62 | 67483 | 68268 | + | LicD |
| CAZyme | HRGMv2_2520_2 | HRGMv2_2520_2_63 | 68316 | 69011 | + | GT26 |
| CAZyme | HRGMv2_2520_2 | HRGMv2_2520_2_64 | 68986 | 70071 | + | GT4 |
| pfam | HRGMv2_2520_2 | HRGMv2_2520_2_65 | 70068 | 71162 | + | Epimerase_2 |
| CAZyme | HRGMv2_2520_2 | HRGMv2_2520_2_66 | 71162 | 72127 | + | GT2 |
| pfam | HRGMv2_2520_2 | HRGMv2_2520_2_67 | 72183 | 72890 | + | IspD | NTP_transf_3 |
| pfam | HRGMv2_2520_2 | HRGMv2_2520_2_68 | 72892 | 73917 | + | ADH_zinc_N | ADH_N | Glu_dehyd_C |
| TC | HRGMv2_2520_2 | HRGMv2_2520_2_69 | 73924 | 75342 | + | 2.A.66.2.16 |
| NULL(UNKNOWN) | HRGMv2_2520_2 | HRGMv2_2520_2_70 | 75554 | 76693 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_2520_2 | HRGMv2_2520_2_71 | 76823 | 77920 | + | Pyr_redox |
| CAZyme | HRGMv2_2520_2 | HRGMv2_2520_2_72 | 77936 | 78991 | + | GT113 |
Gene ID: HRGMv2_2520_2_59
Type: TC
Location: 64684 - 65379 (+)
Type: TC
Location: 64684 - 65379 (+)
Gene ID: HRGMv2_2520_2_60
Type: TC
Location: 65392 - 66087 (+)
Type: TC
Location: 65392 - 66087 (+)
Gene ID: HRGMv2_2520_2_61
Type: TC
Location: 66107 - 67480 (+)
Type: TC
Location: 66107 - 67480 (+)
Gene ID: HRGMv2_2520_2_62
Type: pfam
Location: 67483 - 68268 (+)
Type: pfam
Location: 67483 - 68268 (+)
Gene ID: HRGMv2_2520_2_63
Type: CAZyme
Location: 68316 - 69011 (+)
Type: CAZyme
Location: 68316 - 69011 (+)
Gene ID: HRGMv2_2520_2_64
Type: CAZyme
Location: 68986 - 70071 (+)
Type: CAZyme
Location: 68986 - 70071 (+)
Gene ID: HRGMv2_2520_2_65
Type: pfam
Location: 70068 - 71162 (+)
Type: pfam
Location: 70068 - 71162 (+)
Gene ID: HRGMv2_2520_2_66
Type: CAZyme
Location: 71162 - 72127 (+)
Type: CAZyme
Location: 71162 - 72127 (+)
Gene ID: HRGMv2_2520_2_67
Type: pfam
Location: 72183 - 72890 (+)
Type: pfam
Location: 72183 - 72890 (+)
Gene ID: HRGMv2_2520_2_68
Type: pfam
Location: 72892 - 73917 (+)
Type: pfam
Location: 72892 - 73917 (+)
Gene ID: HRGMv2_2520_2_69
Type: TC
Location: 73924 - 75342 (+)
Type: TC
Location: 73924 - 75342 (+)
Gene ID: HRGMv2_2520_2_70
Type:
Location: 75554 - 76693 (+)
Type:
Location: 75554 - 76693 (+)
Gene ID: HRGMv2_2520_2_71
Type: STP
Location: 76823 - 77920 (+)
Type: STP
Location: 76823 - 77920 (+)
Gene ID: HRGMv2_2520_2_72
Type: CAZyme
Location: 77936 - 78991 (+)
Type: CAZyme
Location: 77936 - 78991 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.