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Cluster: HRGMv2_2520_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2520_29 HRGMv2_2520_29_1 674 2905 + GH31_15
CAZyme HRGMv2_2520_29 HRGMv2_2520_29_2 2973 4580 + GH13_31
TC HRGMv2_2520_29 HRGMv2_2520_29_3 4905 5633 + 3.A.1.12.8
TC HRGMv2_2520_29 HRGMv2_2520_29_4 5626 7146 + 3.A.1.12.8
NULL(UNKNOWN) HRGMv2_2520_29 HRGMv2_2520_29_5 7210 7542 - NULL(UNKNOWN)
[View Structural Homologs]
STP HRGMv2_2520_29 HRGMv2_2520_29_6 7581 8156 - TetR_N
TC HRGMv2_2520_29 HRGMv2_2520_29_7 8253 9167 + 2.A.4.1.7
TC HRGMv2_2520_29 HRGMv2_2520_29_8 9279 11804 + 3.A.1.122.13
TC HRGMv2_2520_29 HRGMv2_2520_29_9 11866 12486 + 2.A.4.1.7
Gene ID: HRGMv2_2520_29_1
Type: CAZyme
Location: 674 - 2905 (+)
Gene ID: HRGMv2_2520_29_2
Type: CAZyme
Location: 2973 - 4580 (+)
Gene ID: HRGMv2_2520_29_3
Type: TC
Location: 4905 - 5633 (+)
Gene ID: HRGMv2_2520_29_4
Type: TC
Location: 5626 - 7146 (+)
Gene ID: HRGMv2_2520_29_5
Type:
Location: 7210 - 7542 (-)
Gene ID: HRGMv2_2520_29_6
Type: STP
Location: 7581 - 8156 (-)
Gene ID: HRGMv2_2520_29_7
Type: TC
Location: 8253 - 9167 (+)
Gene ID: HRGMv2_2520_29_8
Type: TC
Location: 9279 - 11804 (+)
Gene ID: HRGMv2_2520_29_9
Type: TC
Location: 11866 - 12486 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota
→
Class
Bacilli
→
Order
Lactobacillales
→
Family
Streptococcaceae
→
Genus
Streptococcus
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2520_29_3 vegan > omnivore 2.51393 0.00732
HRGMv2_2520_29_3 vegetarian > omnivore 2.42617 0.00207
HRGMv2_2520_29_6 vegetarian > omnivore 1.09345 0.00207

🧭 Explore Read Mapping of CGC

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