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Cluster: HRGMv2_2520_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2520_18 HRGMv2_2520_18_8 5359 7005 - 3.A.1.147.8
TC HRGMv2_2520_18 HRGMv2_2520_18_9 6995 7738 - 3.A.1.147.8
peptidase HRGMv2_2520_18 HRGMv2_2520_18_10 7845 9473 - M20.UPW
peptidase HRGMv2_2520_18 HRGMv2_2520_18_11 9540 12632 - S15.UPW
CAZyme HRGMv2_2520_18 HRGMv2_2520_18_12 13105 14556 + GH13_5
pfam HRGMv2_2520_18 HRGMv2_2520_18_13 14924 15238 - Thioredoxin | AhpC-TSA | Redoxin | Thioredoxin_2 | TraF | Thioredoxin_9
peptidase HRGMv2_2520_18 HRGMv2_2520_18_14 15332 18403 - S15.UPW
TC HRGMv2_2520_18 HRGMv2_2520_18_15 18518 20518 - 3.A.1.5.19
Gene ID: HRGMv2_2520_18_8
Type: TC
Location: 5359 - 7005 (-)
Gene ID: HRGMv2_2520_18_9
Type: TC
Location: 6995 - 7738 (-)
Gene ID: HRGMv2_2520_18_10
Type: peptidase
Location: 7845 - 9473 (-)
Gene ID: HRGMv2_2520_18_11
Type: peptidase
Location: 9540 - 12632 (-)
Gene ID: HRGMv2_2520_18_12
Type: CAZyme
Location: 13105 - 14556 (+)
Gene ID: HRGMv2_2520_18_13
Type: pfam
Location: 14924 - 15238 (-)
Gene ID: HRGMv2_2520_18_14
Type: peptidase
Location: 15332 - 18403 (-)
Gene ID: HRGMv2_2520_18_15
Type: TC
Location: 18518 - 20518 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota
→
Class
Bacilli
→
Order
Lactobacillales
→
Family
Streptococcaceae
→
Genus
Streptococcus
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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