Cluster: HRGMv2_2520_CGC19
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2520
- CGC Family ID: CGCFAM_02168
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2520_13 | HRGMv2_2520_13_20 | 17652 | 18998 | - | 2.A.21.9.1 |
| TF | HRGMv2_2520_13 | HRGMv2_2520_13_21 | 18991 | 19692 | - | Trans_reg_C |
| pfam | HRGMv2_2520_13 | HRGMv2_2520_13_22 | 20074 | 22017 | - | tRNA-synt_2b | TGS | HGTP_anticodon | tRNA_SAD |
| CAZyme | HRGMv2_2520_13 | HRGMv2_2520_13_23 | 22396 | 23718 | - | GT4 |
| CAZyme | HRGMv2_2520_13 | HRGMv2_2520_13_24 | 23720 | 24718 | - | GT4 |
Gene ID: HRGMv2_2520_13_20
Type: TC
Location: 17652 - 18998 (-)
Type: TC
Location: 17652 - 18998 (-)
Gene ID: HRGMv2_2520_13_21
Type: TF
Location: 18991 - 19692 (-)
Type: TF
Location: 18991 - 19692 (-)
Gene ID: HRGMv2_2520_13_22
Type: pfam
Location: 20074 - 22017 (-)
Type: pfam
Location: 20074 - 22017 (-)
Gene ID: HRGMv2_2520_13_23
Type: CAZyme
Location: 22396 - 23718 (-)
Type: CAZyme
Location: 22396 - 23718 (-)
Gene ID: HRGMv2_2520_13_24
Type: CAZyme
Location: 23720 - 24718 (-)
Type: CAZyme
Location: 23720 - 24718 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.