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Cluster: HRGMv2_2520_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2520_8 HRGMv2_2520_8_4 2846 3577 - 3.A.1.125.3
TF HRGMv2_2520_8 HRGMv2_2520_8_5 4265 4702 + MarR
TC HRGMv2_2520_8 HRGMv2_2520_8_6 4702 5406 + 3.A.1.15.3
TC HRGMv2_2520_8 HRGMv2_2520_8_7 5399 6202 + 3.A.1.15.3
TC HRGMv2_2520_8 HRGMv2_2520_8_8 6211 7710 + 3.A.1.15.3
pfam HRGMv2_2520_8 HRGMv2_2520_8_9 7986 8528 + DUF6287
CAZyme HRGMv2_2520_8 HRGMv2_2520_8_10 8590 10668 - GH92
CAZyme HRGMv2_2520_8 HRGMv2_2520_8_11 10866 12146 + GH125
CAZyme HRGMv2_2520_8 HRGMv2_2520_8_12 12332 14977 + GH38
pfam HRGMv2_2520_8 HRGMv2_2520_8_13 15061 15930 + ROK
CAZyme HRGMv2_2520_8 HRGMv2_2520_8_14 15924 17804 + GH20
TC HRGMv2_2520_8 HRGMv2_2520_8_15 18017 18946 + 3.A.1.1.10
TC HRGMv2_2520_8 HRGMv2_2520_8_16 18960 19892 + 3.A.1.1.29
STP HRGMv2_2520_8 HRGMv2_2520_8_17 19956 21437 + SBP_bac_1
TC HRGMv2_2520_8 HRGMv2_2520_8_18 21632 22243 + 9.B.28.1.12
TC HRGMv2_2520_8 HRGMv2_2520_8_19 22246 23892 + 8.A.59.2.1
Gene ID: HRGMv2_2520_8_4
Type: TC
Location: 2846 - 3577 (-)
Gene ID: HRGMv2_2520_8_5
Type: TF
Location: 4265 - 4702 (+)
Gene ID: HRGMv2_2520_8_6
Type: TC
Location: 4702 - 5406 (+)
Gene ID: HRGMv2_2520_8_7
Type: TC
Location: 5399 - 6202 (+)
Gene ID: HRGMv2_2520_8_8
Type: TC
Location: 6211 - 7710 (+)
Gene ID: HRGMv2_2520_8_9
Type: pfam
Location: 7986 - 8528 (+)
Gene ID: HRGMv2_2520_8_10
Type: CAZyme
Location: 8590 - 10668 (-)
Gene ID: HRGMv2_2520_8_11
Type: CAZyme
Location: 10866 - 12146 (+)
Gene ID: HRGMv2_2520_8_12
Type: CAZyme
Location: 12332 - 14977 (+)
Gene ID: HRGMv2_2520_8_13
Type: pfam
Location: 15061 - 15930 (+)
Gene ID: HRGMv2_2520_8_14
Type: CAZyme
Location: 15924 - 17804 (+)
Gene ID: HRGMv2_2520_8_15
Type: TC
Location: 18017 - 18946 (+)
Gene ID: HRGMv2_2520_8_16
Type: TC
Location: 18960 - 19892 (+)
Gene ID: HRGMv2_2520_8_17
Type: STP
Location: 19956 - 21437 (+)
Gene ID: HRGMv2_2520_8_18
Type: TC
Location: 21632 - 22243 (+)
Gene ID: HRGMv2_2520_8_19
Type: TC
Location: 22246 - 23892 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota
→
Class
Bacilli
→
Order
Lactobacillales
→
Family
Streptococcaceae
→
Genus
Streptococcus
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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