Cluster: HRGMv2_2520_CGC10
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2520
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2520_7 | HRGMv2_2520_7_40 | 37592 | 38764 | + | 2.A.1.17.3 |
| CAZyme | HRGMv2_2520_7 | HRGMv2_2520_7_41 | 38848 | 40002 | - | CBM50 |
| TC | HRGMv2_2520_7 | HRGMv2_2520_7_42 | 40553 | 41176 | - | 3.A.2.2.2 |
| TC | HRGMv2_2520_7 | HRGMv2_2520_7_43 | 41198 | 42595 | - | 3.A.2.2.2 |
| TC | HRGMv2_2520_7 | HRGMv2_2520_7_44 | 42582 | 44372 | - | 3.A.2.2.2 |
| pfam | HRGMv2_2520_7 | HRGMv2_2520_7_45 | 44406 | 45110 | - | Acetyltransf_1 | Acetyltransf_3 |
| TC | HRGMv2_2520_7 | HRGMv2_2520_7_46 | 45107 | 45427 | - | 3.A.2.2.2 |
| TC | HRGMv2_2520_7 | HRGMv2_2520_7_47 | 45417 | 46427 | - | 3.A.2.2.2 |
| NULL(UNKNOWN) | HRGMv2_2520_7 | HRGMv2_2520_7_48 | 46436 | 47026 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2520_7 | HRGMv2_2520_7_49 | 47083 | 47562 | - | 3.A.2.2.2 |
| TC | HRGMv2_2520_7 | HRGMv2_2520_7_50 | 47603 | 49552 | - | 3.A.2.2.2 |
Gene ID: HRGMv2_2520_7_40
Type: TC
Location: 37592 - 38764 (+)
Type: TC
Location: 37592 - 38764 (+)
Gene ID: HRGMv2_2520_7_41
Type: CAZyme
Location: 38848 - 40002 (-)
Type: CAZyme
Location: 38848 - 40002 (-)
Gene ID: HRGMv2_2520_7_42
Type: TC
Location: 40553 - 41176 (-)
Type: TC
Location: 40553 - 41176 (-)
Gene ID: HRGMv2_2520_7_43
Type: TC
Location: 41198 - 42595 (-)
Type: TC
Location: 41198 - 42595 (-)
Gene ID: HRGMv2_2520_7_44
Type: TC
Location: 42582 - 44372 (-)
Type: TC
Location: 42582 - 44372 (-)
Gene ID: HRGMv2_2520_7_45
Type: pfam
Location: 44406 - 45110 (-)
Type: pfam
Location: 44406 - 45110 (-)
Gene ID: HRGMv2_2520_7_46
Type: TC
Location: 45107 - 45427 (-)
Type: TC
Location: 45107 - 45427 (-)
Gene ID: HRGMv2_2520_7_47
Type: TC
Location: 45417 - 46427 (-)
Type: TC
Location: 45417 - 46427 (-)
Gene ID: HRGMv2_2520_7_48
Type:
Location: 46436 - 47026 (-)
Type:
Location: 46436 - 47026 (-)
Gene ID: HRGMv2_2520_7_49
Type: TC
Location: 47083 - 47562 (-)
Type: TC
Location: 47083 - 47562 (-)
Gene ID: HRGMv2_2520_7_50
Type: TC
Location: 47603 - 49552 (-)
Type: TC
Location: 47603 - 49552 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2520_7_45 | vegan > omnivore | 3.93526 | 0.00732 |
| HRGMv2_2520_7_45 | vegetarian > omnivore | 3.69206 | 0.00207 |