Cluster: HRGMv2_2520_CGC1
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2520
- CGC Family ID: CGCFAM_00718
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2520_1 | HRGMv2_2520_1_107 | 82605 | 84011 | - | 3.A.2.1.5 |
| TC | HRGMv2_2520_1 | HRGMv2_2520_1_108 | 84100 | 84981 | - | 3.A.2.1.1 |
| TC | HRGMv2_2520_1 | HRGMv2_2520_1_109 | 84997 | 86502 | - | 3.A.2.1.5 |
| pfam | HRGMv2_2520_1 | HRGMv2_2520_1_110 | 86518 | 87054 | - | OSCP |
| pfam | HRGMv2_2520_1 | HRGMv2_2520_1_111 | 87054 | 87548 | - | ATP-synt_B |
| TC | HRGMv2_2520_1 | HRGMv2_2520_1_112 | 87564 | 88280 | - | 3.A.2.1.2 |
| pfam | HRGMv2_2520_1 | HRGMv2_2520_1_113 | 88313 | 88513 | - | ATP-synt_C |
| peptidase | HRGMv2_2520_1 | HRGMv2_2520_1_114 | 88786 | 94713 | - | M26.002 |
| CAZyme | HRGMv2_2520_1 | HRGMv2_2520_1_115 | 94959 | 96386 | - | GT5 |
| pfam | HRGMv2_2520_1 | HRGMv2_2520_1_116 | 96386 | 97522 | - | NTP_transferase | Hexapep_GlmU |
| pfam | HRGMv2_2520_1 | HRGMv2_2520_1_117 | 97512 | 98654 | - | NTP_transferase | Hexapep_GlmU |
| CAZyme | HRGMv2_2520_1 | HRGMv2_2520_1_118 | 98772 | 100673 | - | CBM48 | GH13_9 |
| TC | HRGMv2_2520_1 | HRGMv2_2520_1_119 | 101060 | 102793 | - | 8.A.7.1.1 |
Gene ID: HRGMv2_2520_1_107
Type: TC
Location: 82605 - 84011 (-)
Type: TC
Location: 82605 - 84011 (-)
Gene ID: HRGMv2_2520_1_108
Type: TC
Location: 84100 - 84981 (-)
Type: TC
Location: 84100 - 84981 (-)
Gene ID: HRGMv2_2520_1_109
Type: TC
Location: 84997 - 86502 (-)
Type: TC
Location: 84997 - 86502 (-)
Gene ID: HRGMv2_2520_1_110
Type: pfam
Location: 86518 - 87054 (-)
Type: pfam
Location: 86518 - 87054 (-)
Gene ID: HRGMv2_2520_1_111
Type: pfam
Location: 87054 - 87548 (-)
Type: pfam
Location: 87054 - 87548 (-)
Gene ID: HRGMv2_2520_1_112
Type: TC
Location: 87564 - 88280 (-)
Type: TC
Location: 87564 - 88280 (-)
Gene ID: HRGMv2_2520_1_113
Type: pfam
Location: 88313 - 88513 (-)
Type: pfam
Location: 88313 - 88513 (-)
Gene ID: HRGMv2_2520_1_114
Type: peptidase
Location: 88786 - 94713 (-)
Type: peptidase
Location: 88786 - 94713 (-)
Gene ID: HRGMv2_2520_1_115
Type: CAZyme
Location: 94959 - 96386 (-)
Type: CAZyme
Location: 94959 - 96386 (-)
Gene ID: HRGMv2_2520_1_116
Type: pfam
Location: 96386 - 97522 (-)
Type: pfam
Location: 96386 - 97522 (-)
Gene ID: HRGMv2_2520_1_117
Type: pfam
Location: 97512 - 98654 (-)
Type: pfam
Location: 97512 - 98654 (-)
Gene ID: HRGMv2_2520_1_118
Type: CAZyme
Location: 98772 - 100673 (-)
Type: CAZyme
Location: 98772 - 100673 (-)
Gene ID: HRGMv2_2520_1_119
Type: TC
Location: 101060 - 102793 (-)
Type: TC
Location: 101060 - 102793 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.