Cluster: HRGMv2_2516_CGC51
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2516
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2516_38 | HRGMv2_2516_38_1 | 58 | 1755 | - | 3.A.1.1.9 |
| TC | HRGMv2_2516_38 | HRGMv2_2516_38_2 | 1773 | 2642 | - | 3.A.1.1.9 |
| TC | HRGMv2_2516_38 | HRGMv2_2516_38_3 | 2660 | 3613 | - | 3.A.1.1.9 |
| pfam | HRGMv2_2516_38 | HRGMv2_2516_38_4 | 3890 | 4489 | + | Hexapep | Mac | Hexapep_2 |
| CAZyme | HRGMv2_2516_38 | HRGMv2_2516_38_5 | 4547 | 6142 | - | GH28 |
| peptidase | HRGMv2_2516_38 | HRGMv2_2516_38_6 | 6236 | 7081 | - | S09.UPW |
| NULL(UNKNOWN) | HRGMv2_2516_38 | HRGMv2_2516_38_7 | 7154 | 7846 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2516_38 | HRGMv2_2516_38_8 | 7843 | 8781 | - | CE4 |
| CAZyme | HRGMv2_2516_38 | HRGMv2_2516_38_9 | 9137 | 10051 | - | CE4 |
| pfam | HRGMv2_2516_38 | HRGMv2_2516_38_10 | 10138 | 11082 | - | TMEM175 |
| TC | HRGMv2_2516_38 | HRGMv2_2516_38_11 | 11158 | 11967 | - | 3.A.1.9.1 |
| TC | HRGMv2_2516_38 | HRGMv2_2516_38_12 | 11967 | 12770 | - | 3.A.1.9.1 |
| TC | HRGMv2_2516_38 | HRGMv2_2516_38_13 | 12772 | 13569 | - | 3.A.1.9.1 |
Gene ID: HRGMv2_2516_38_1
Type: TC
Location: 58 - 1755 (-)
Type: TC
Location: 58 - 1755 (-)
Gene ID: HRGMv2_2516_38_2
Type: TC
Location: 1773 - 2642 (-)
Type: TC
Location: 1773 - 2642 (-)
Gene ID: HRGMv2_2516_38_3
Type: TC
Location: 2660 - 3613 (-)
Type: TC
Location: 2660 - 3613 (-)
Gene ID: HRGMv2_2516_38_4
Type: pfam
Location: 3890 - 4489 (+)
Type: pfam
Location: 3890 - 4489 (+)
Gene ID: HRGMv2_2516_38_5
Type: CAZyme
Location: 4547 - 6142 (-)
Type: CAZyme
Location: 4547 - 6142 (-)
Gene ID: HRGMv2_2516_38_6
Type: peptidase
Location: 6236 - 7081 (-)
Type: peptidase
Location: 6236 - 7081 (-)
Gene ID: HRGMv2_2516_38_7
Type:
Location: 7154 - 7846 (+)
Type:
Location: 7154 - 7846 (+)
Gene ID: HRGMv2_2516_38_8
Type: CAZyme
Location: 7843 - 8781 (-)
Type: CAZyme
Location: 7843 - 8781 (-)
Gene ID: HRGMv2_2516_38_9
Type: CAZyme
Location: 9137 - 10051 (-)
Type: CAZyme
Location: 9137 - 10051 (-)
Gene ID: HRGMv2_2516_38_10
Type: pfam
Location: 10138 - 11082 (-)
Type: pfam
Location: 10138 - 11082 (-)
Gene ID: HRGMv2_2516_38_11
Type: TC
Location: 11158 - 11967 (-)
Type: TC
Location: 11158 - 11967 (-)
Gene ID: HRGMv2_2516_38_12
Type: TC
Location: 11967 - 12770 (-)
Type: TC
Location: 11967 - 12770 (-)
Gene ID: HRGMv2_2516_38_13
Type: TC
Location: 12772 - 13569 (-)
Type: TC
Location: 12772 - 13569 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Schleiferilactobacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.