dbCAN Logo

Cluster: HRGMv2_2516_CGC47

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2516_31 HRGMv2_2516_31_2 751 1839 + 8.A.59.2.1
TF HRGMv2_2516_31 HRGMv2_2516_31_3 1817 3100 + HTH_AraC | HTH_AraC
pfam HRGMv2_2516_31 HRGMv2_2516_31_4 3078 3764 + DUF624
CAZyme HRGMv2_2516_31 HRGMv2_2516_31_5 3764 5500 + PL27
CAZyme HRGMv2_2516_31 HRGMv2_2516_31_6 5671 6927 + GH43_24
TC HRGMv2_2516_31 HRGMv2_2516_31_7 7074 8741 + 1.A.33.1.4
pfam HRGMv2_2516_31 HRGMv2_2516_31_8 8837 9235 - PNPOx_N
TC HRGMv2_2516_31 HRGMv2_2516_31_9 9560 11329 + 3.A.3.7.2
TC HRGMv2_2516_31 HRGMv2_2516_31_10 11351 13426 + 3.A.3.7.1
TC HRGMv2_2516_31 HRGMv2_2516_31_11 13440 14003 + 3.A.3.7.2
Gene ID: HRGMv2_2516_31_2
Type: TC
Location: 751 - 1839 (+)
Gene ID: HRGMv2_2516_31_3
Type: TF
Location: 1817 - 3100 (+)
Gene ID: HRGMv2_2516_31_4
Type: pfam
Location: 3078 - 3764 (+)
Gene ID: HRGMv2_2516_31_5
Type: CAZyme
Location: 3764 - 5500 (+)
Gene ID: HRGMv2_2516_31_6
Type: CAZyme
Location: 5671 - 6927 (+)
Gene ID: HRGMv2_2516_31_7
Type: TC
Location: 7074 - 8741 (+)
Gene ID: HRGMv2_2516_31_8
Type: pfam
Location: 8837 - 9235 (-)
Gene ID: HRGMv2_2516_31_9
Type: TC
Location: 9560 - 11329 (+)
Gene ID: HRGMv2_2516_31_10
Type: TC
Location: 11351 - 13426 (+)
Gene ID: HRGMv2_2516_31_11
Type: TC
Location: 13440 - 14003 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List