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Cluster: HRGMv2_2516_CGC44

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2516_23 HRGMv2_2516_23_17 17802 19295 - 2.A.1.3.61
TF HRGMv2_2516_23 HRGMv2_2516_23_18 19417 19845 + MerR
NULL(UNKNOWN) HRGMv2_2516_23 HRGMv2_2516_23_19 19842 20060 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2516_23 HRGMv2_2516_23_20 20195 21436 - GH27
CAZyme HRGMv2_2516_23 HRGMv2_2516_23_21 21439 23778 - GH51_2
CAZyme HRGMv2_2516_23 HRGMv2_2516_23_22 24040 25497 - GH51_1
TF HRGMv2_2516_23 HRGMv2_2516_23_23 25904 27019 - GntR
pfam HRGMv2_2516_23 HRGMv2_2516_23_24 27208 27699 + DUF1836
TC HRGMv2_2516_23 HRGMv2_2516_23_25 27932 29596 - 3.A.1.5.19
Gene ID: HRGMv2_2516_23_17
Type: TC
Location: 17802 - 19295 (-)
Gene ID: HRGMv2_2516_23_18
Type: TF
Location: 19417 - 19845 (+)
Gene ID: HRGMv2_2516_23_19
Type:
Location: 19842 - 20060 (-)
Gene ID: HRGMv2_2516_23_20
Type: CAZyme
Location: 20195 - 21436 (-)
Gene ID: HRGMv2_2516_23_21
Type: CAZyme
Location: 21439 - 23778 (-)
Gene ID: HRGMv2_2516_23_22
Type: CAZyme
Location: 24040 - 25497 (-)
Gene ID: HRGMv2_2516_23_23
Type: TF
Location: 25904 - 27019 (-)
Gene ID: HRGMv2_2516_23_24
Type: pfam
Location: 27208 - 27699 (+)
Gene ID: HRGMv2_2516_23_25
Type: TC
Location: 27932 - 29596 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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