Cluster: HRGMv2_2516_CGC37
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2516
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2516_17 | HRGMv2_2516_17_10 | 4583 | 5287 | - | 4.A.3.2.4 |
| TC | HRGMv2_2516_17 | HRGMv2_2516_17_11 | 5235 | 5870 | - | 4.A.3.2.4 |
| TC | HRGMv2_2516_17 | HRGMv2_2516_17_12 | 5970 | 6302 | - | 4.A.3.2.2 |
| TC | HRGMv2_2516_17 | HRGMv2_2516_17_13 | 6522 | 7787 | - | 3.A.18.1.1 |
| pfam | HRGMv2_2516_17 | HRGMv2_2516_17_14 | 7777 | 8790 | - | GFO_IDH_MocA | NAD_binding_3 |
| pfam | HRGMv2_2516_17 | HRGMv2_2516_17_15 | 8888 | 9262 | + | DUF4828 |
| CAZyme | HRGMv2_2516_17 | HRGMv2_2516_17_16 | 9222 | 9971 | - | GH25 |
Gene ID: HRGMv2_2516_17_10
Type: TC
Location: 4583 - 5287 (-)
Type: TC
Location: 4583 - 5287 (-)
Gene ID: HRGMv2_2516_17_11
Type: TC
Location: 5235 - 5870 (-)
Type: TC
Location: 5235 - 5870 (-)
Gene ID: HRGMv2_2516_17_12
Type: TC
Location: 5970 - 6302 (-)
Type: TC
Location: 5970 - 6302 (-)
Gene ID: HRGMv2_2516_17_13
Type: TC
Location: 6522 - 7787 (-)
Type: TC
Location: 6522 - 7787 (-)
Gene ID: HRGMv2_2516_17_14
Type: pfam
Location: 7777 - 8790 (-)
Type: pfam
Location: 7777 - 8790 (-)
Gene ID: HRGMv2_2516_17_15
Type: pfam
Location: 8888 - 9262 (+)
Type: pfam
Location: 8888 - 9262 (+)
Gene ID: HRGMv2_2516_17_16
Type: CAZyme
Location: 9222 - 9971 (-)
Type: CAZyme
Location: 9222 - 9971 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Schleiferilactobacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.