Cluster: HRGMv2_2516_CGC28
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2516
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2516_12 | HRGMv2_2516_12_13 | 14670 | 16256 | + | 2.A.1.3.5 |
| pfam | HRGMv2_2516_12 | HRGMv2_2516_12_14 | 16399 | 17349 | + | DHH | DHHA1 |
| NULL(UNKNOWN) | HRGMv2_2516_12 | HRGMv2_2516_12_15 | 17438 | 17821 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2516_12 | HRGMv2_2516_12_16 | 17956 | 19287 | - | 2.A.2.3.3 |
| pfam | HRGMv2_2516_12 | HRGMv2_2516_12_17 | 19300 | 19794 | - | DUF1440 |
| NULL(UNKNOWN) | HRGMv2_2516_12 | HRGMv2_2516_12_18 | 19946 | 20683 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2516_12 | HRGMv2_2516_12_19 | 20937 | 21686 | - | CE1 |
| CAZyme | HRGMv2_2516_12 | HRGMv2_2516_12_20 | 21667 | 24093 | - | GH35 |
| TF | HRGMv2_2516_12 | HRGMv2_2516_12_21 | 24065 | 25072 | - | LacI |
| TC | HRGMv2_2516_12 | HRGMv2_2516_12_22 | 25106 | 25939 | - | 3.A.1.1.34 |
| TC | HRGMv2_2516_12 | HRGMv2_2516_12_23 | 25952 | 26842 | - | 3.A.1.1.20 |
| TC | HRGMv2_2516_12 | HRGMv2_2516_12_24 | 27027 | 28274 | - | 3.A.1.1.19 |
| CAZyme | HRGMv2_2516_12 | HRGMv2_2516_12_25 | 28437 | 31568 | - | GH94 |
| CAZyme | HRGMv2_2516_12 | HRGMv2_2516_12_26 | 31586 | 33748 | - | GH3 |
Gene ID: HRGMv2_2516_12_13
Type: TC
Location: 14670 - 16256 (+)
Type: TC
Location: 14670 - 16256 (+)
Gene ID: HRGMv2_2516_12_14
Type: pfam
Location: 16399 - 17349 (+)
Type: pfam
Location: 16399 - 17349 (+)
Gene ID: HRGMv2_2516_12_15
Type:
Location: 17438 - 17821 (+)
Type:
Location: 17438 - 17821 (+)
Gene ID: HRGMv2_2516_12_16
Type: TC
Location: 17956 - 19287 (-)
Type: TC
Location: 17956 - 19287 (-)
Gene ID: HRGMv2_2516_12_17
Type: pfam
Location: 19300 - 19794 (-)
Type: pfam
Location: 19300 - 19794 (-)
Gene ID: HRGMv2_2516_12_18
Type:
Location: 19946 - 20683 (+)
Type:
Location: 19946 - 20683 (+)
Gene ID: HRGMv2_2516_12_19
Type: CAZyme
Location: 20937 - 21686 (-)
Type: CAZyme
Location: 20937 - 21686 (-)
Gene ID: HRGMv2_2516_12_20
Type: CAZyme
Location: 21667 - 24093 (-)
Type: CAZyme
Location: 21667 - 24093 (-)
Gene ID: HRGMv2_2516_12_21
Type: TF
Location: 24065 - 25072 (-)
Type: TF
Location: 24065 - 25072 (-)
Gene ID: HRGMv2_2516_12_22
Type: TC
Location: 25106 - 25939 (-)
Type: TC
Location: 25106 - 25939 (-)
Gene ID: HRGMv2_2516_12_23
Type: TC
Location: 25952 - 26842 (-)
Type: TC
Location: 25952 - 26842 (-)
Gene ID: HRGMv2_2516_12_24
Type: TC
Location: 27027 - 28274 (-)
Type: TC
Location: 27027 - 28274 (-)
Gene ID: HRGMv2_2516_12_25
Type: CAZyme
Location: 28437 - 31568 (-)
Type: CAZyme
Location: 28437 - 31568 (-)
Gene ID: HRGMv2_2516_12_26
Type: CAZyme
Location: 31586 - 33748 (-)
Type: CAZyme
Location: 31586 - 33748 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Schleiferilactobacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.