Cluster: HRGMv2_2516_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2516
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2516_1 | HRGMv2_2516_1_57 | 64480 | 65253 | + | 3.A.1.147.9 |
| NULL(UNKNOWN) | HRGMv2_2516_1 | HRGMv2_2516_1_58 | 65263 | 67035 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_2516_1 | HRGMv2_2516_1_59 | 67072 | 68844 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2516_1 | HRGMv2_2516_1_60 | 68986 | 70410 | + | 2.A.1.3.50 |
| CAZyme | HRGMv2_2516_1 | HRGMv2_2516_1_61 | 70457 | 71935 | - | GH13_5 |
| STP | HRGMv2_2516_1 | HRGMv2_2516_1_62 | 72097 | 72654 | + | NUDIX |
| TC | HRGMv2_2516_1 | HRGMv2_2516_1_63 | 72664 | 73509 | + | 8.A.5.1.4 |
Gene ID: HRGMv2_2516_1_57
Type: TC
Location: 64480 - 65253 (+)
Type: TC
Location: 64480 - 65253 (+)
Gene ID: HRGMv2_2516_1_58
Type:
Location: 65263 - 67035 (+)
Type:
Location: 65263 - 67035 (+)
Gene ID: HRGMv2_2516_1_59
Type:
Location: 67072 - 68844 (+)
Type:
Location: 67072 - 68844 (+)
Gene ID: HRGMv2_2516_1_60
Type: TC
Location: 68986 - 70410 (+)
Type: TC
Location: 68986 - 70410 (+)
Gene ID: HRGMv2_2516_1_61
Type: CAZyme
Location: 70457 - 71935 (-)
Type: CAZyme
Location: 70457 - 71935 (-)
Gene ID: HRGMv2_2516_1_62
Type: STP
Location: 72097 - 72654 (+)
Type: STP
Location: 72097 - 72654 (+)
Gene ID: HRGMv2_2516_1_63
Type: TC
Location: 72664 - 73509 (+)
Type: TC
Location: 72664 - 73509 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Schleiferilactobacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.