Cluster: HRGMv2_2516_CGC19
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_2516
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2516_7 | HRGMv2_2516_7_58 | 37824 | 38756 | + | GT2 |
| pfam | HRGMv2_2516_7 | HRGMv2_2516_7_59 | 39039 | 40154 | - | VanZ |
| pfam | HRGMv2_2516_7 | HRGMv2_2516_7_60 | 40159 | 41415 | - | tRNA-synt_1b | S4 | SYY_C-terminal |
| TC | HRGMv2_2516_7 | HRGMv2_2516_7_61 | 41724 | 42377 | - | 3.A.1.12.4 |
| TC | HRGMv2_2516_7 | HRGMv2_2516_7_62 | 42380 | 43324 | - | 3.A.1.12.4 |
| TC | HRGMv2_2516_7 | HRGMv2_2516_7_63 | 43329 | 43961 | - | 3.A.1.12.4 |
| TC | HRGMv2_2516_7 | HRGMv2_2516_7_64 | 43945 | 45216 | - | 3.A.1.12.4 |
| NULL(UNKNOWN) | HRGMv2_2516_7 | HRGMv2_2516_7_65 | 45431 | 46210 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | HRGMv2_2516_7 | HRGMv2_2516_7_66 | 46355 | 47824 | - | C69.UNW |
| CAZyme | HRGMv2_2516_7 | HRGMv2_2516_7_67 | 47927 | 48721 | + | CE1 |
| pfam | HRGMv2_2516_7 | HRGMv2_2516_7_68 | 48773 | 49867 | - | Fe-ADH | Fe-ADH_2 |
| CAZyme | HRGMv2_2516_7 | HRGMv2_2516_7_69 | 50402 | 50971 | + | GT113 |
| CAZyme | HRGMv2_2516_7 | HRGMv2_2516_7_70 | 50993 | 51448 | + | GT113 |
| NULL(UNKNOWN) | HRGMv2_2516_7 | HRGMv2_2516_7_71 | 51605 | 52477 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2516_7 | HRGMv2_2516_7_72 | 52467 | 53909 | - | GT4 |
Gene ID: HRGMv2_2516_7_58
Type: CAZyme
Location: 37824 - 38756 (+)
Type: CAZyme
Location: 37824 - 38756 (+)
Gene ID: HRGMv2_2516_7_59
Type: pfam
Location: 39039 - 40154 (-)
Type: pfam
Location: 39039 - 40154 (-)
Gene ID: HRGMv2_2516_7_60
Type: pfam
Location: 40159 - 41415 (-)
Type: pfam
Location: 40159 - 41415 (-)
Gene ID: HRGMv2_2516_7_61
Type: TC
Location: 41724 - 42377 (-)
Type: TC
Location: 41724 - 42377 (-)
Gene ID: HRGMv2_2516_7_62
Type: TC
Location: 42380 - 43324 (-)
Type: TC
Location: 42380 - 43324 (-)
Gene ID: HRGMv2_2516_7_63
Type: TC
Location: 43329 - 43961 (-)
Type: TC
Location: 43329 - 43961 (-)
Gene ID: HRGMv2_2516_7_64
Type: TC
Location: 43945 - 45216 (-)
Type: TC
Location: 43945 - 45216 (-)
Gene ID: HRGMv2_2516_7_65
Type:
Location: 45431 - 46210 (-)
Type:
Location: 45431 - 46210 (-)
Gene ID: HRGMv2_2516_7_66
Type: peptidase
Location: 46355 - 47824 (-)
Type: peptidase
Location: 46355 - 47824 (-)
Gene ID: HRGMv2_2516_7_67
Type: CAZyme
Location: 47927 - 48721 (+)
Type: CAZyme
Location: 47927 - 48721 (+)
Gene ID: HRGMv2_2516_7_68
Type: pfam
Location: 48773 - 49867 (-)
Type: pfam
Location: 48773 - 49867 (-)
Gene ID: HRGMv2_2516_7_69
Type: CAZyme
Location: 50402 - 50971 (+)
Type: CAZyme
Location: 50402 - 50971 (+)
Gene ID: HRGMv2_2516_7_70
Type: CAZyme
Location: 50993 - 51448 (+)
Type: CAZyme
Location: 50993 - 51448 (+)
Gene ID: HRGMv2_2516_7_71
Type:
Location: 51605 - 52477 (-)
Type:
Location: 51605 - 52477 (-)
Gene ID: HRGMv2_2516_7_72
Type: CAZyme
Location: 52467 - 53909 (-)
Type: CAZyme
Location: 52467 - 53909 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Schleiferilactobacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.