Cluster: HRGMv2_2516_CGC11
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2516
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2516_4 | HRGMv2_2516_4_115 | 123949 | 125097 | + | 9.B.34.1.3 |
| pfam | HRGMv2_2516_4 | HRGMv2_2516_4_116 | 125289 | 125438 | + | Ribosomal_L33 |
| NULL(UNKNOWN) | HRGMv2_2516_4 | HRGMv2_2516_4_117 | 125978 | 126262 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2516_4 | HRGMv2_2516_4_118 | 126300 | 127697 | - | GH4 |
| TF | HRGMv2_2516_4 | HRGMv2_2516_4_119 | 127858 | 128766 | + | LacI |
| peptidase | HRGMv2_2516_4 | HRGMv2_2516_4_120 | 128975 | 129925 | + | T02.UPW |
| TC | HRGMv2_2516_4 | HRGMv2_2516_4_121 | 129945 | 131231 | + | 4.A.3.2.2 |
| peptidase | HRGMv2_2516_4 | HRGMv2_2516_4_122 | 131228 | 132547 | + | M20.UPW |
| TC | HRGMv2_2516_4 | HRGMv2_2516_4_123 | 132676 | 133575 | + | 2.A.4.1.3 |
| pfam | HRGMv2_2516_4 | HRGMv2_2516_4_124 | 133636 | 133932 | - | Thiamine_BP |
| pfam | HRGMv2_2516_4 | HRGMv2_2516_4_125 | 134169 | 135002 | - | ABC2_membrane | ABC2_membrane_2 | ABC2_membrane_4 |
| TC | HRGMv2_2516_4 | HRGMv2_2516_4_126 | 134995 | 135939 | - | 3.A.1.124.3 |
Gene ID: HRGMv2_2516_4_115
Type: TC
Location: 123949 - 125097 (+)
Type: TC
Location: 123949 - 125097 (+)
Gene ID: HRGMv2_2516_4_116
Type: pfam
Location: 125289 - 125438 (+)
Type: pfam
Location: 125289 - 125438 (+)
Gene ID: HRGMv2_2516_4_117
Type:
Location: 125978 - 126262 (+)
Type:
Location: 125978 - 126262 (+)
Gene ID: HRGMv2_2516_4_118
Type: CAZyme
Location: 126300 - 127697 (-)
Type: CAZyme
Location: 126300 - 127697 (-)
Gene ID: HRGMv2_2516_4_119
Type: TF
Location: 127858 - 128766 (+)
Type: TF
Location: 127858 - 128766 (+)
Gene ID: HRGMv2_2516_4_120
Type: peptidase
Location: 128975 - 129925 (+)
Type: peptidase
Location: 128975 - 129925 (+)
Gene ID: HRGMv2_2516_4_121
Type: TC
Location: 129945 - 131231 (+)
Type: TC
Location: 129945 - 131231 (+)
Gene ID: HRGMv2_2516_4_122
Type: peptidase
Location: 131228 - 132547 (+)
Type: peptidase
Location: 131228 - 132547 (+)
Gene ID: HRGMv2_2516_4_123
Type: TC
Location: 132676 - 133575 (+)
Type: TC
Location: 132676 - 133575 (+)
Gene ID: HRGMv2_2516_4_124
Type: pfam
Location: 133636 - 133932 (-)
Type: pfam
Location: 133636 - 133932 (-)
Gene ID: HRGMv2_2516_4_125
Type: pfam
Location: 134169 - 135002 (-)
Type: pfam
Location: 134169 - 135002 (-)
Gene ID: HRGMv2_2516_4_126
Type: TC
Location: 134995 - 135939 (-)
Type: TC
Location: 134995 - 135939 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Schleiferilactobacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.