dbCAN Logo

Cluster: HRGMv2_2504_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2504_17 HRGMv2_2504_17_16 13243 14022 - CE1
pfam HRGMv2_2504_17 HRGMv2_2504_17_17 14091 15752 - Lactamase_B | RMMBL | Lactamase_B_2 | RNase_J_C | RNase_J_b_CASP
pfam HRGMv2_2504_17 HRGMv2_2504_17_18 15929 18205 - DHH | DHHA1 | ssDNA-exonuc_C | RecJ_OB
TC HRGMv2_2504_17 HRGMv2_2504_17_19 18326 19084 + 3.A.1.3.9
TC HRGMv2_2504_17 HRGMv2_2504_17_20 19095 19889 + 3.A.1.3.16
TC HRGMv2_2504_17 HRGMv2_2504_17_21 19902 20579 + 3.A.1.3.16
TC HRGMv2_2504_17 HRGMv2_2504_17_22 20589 21248 + 3.A.1.3.18
pfam HRGMv2_2504_17 HRGMv2_2504_17_23 21550 22200 - ABC2_membrane_5
TC HRGMv2_2504_17 HRGMv2_2504_17_24 22200 22934 - 3.A.1.149.1
Gene ID: HRGMv2_2504_17_16
Type: CAZyme
Location: 13243 - 14022 (-)
Gene ID: HRGMv2_2504_17_17
Type: pfam
Location: 14091 - 15752 (-)
Gene ID: HRGMv2_2504_17_18
Type: pfam
Location: 15929 - 18205 (-)
Gene ID: HRGMv2_2504_17_19
Type: TC
Location: 18326 - 19084 (+)
Gene ID: HRGMv2_2504_17_20
Type: TC
Location: 19095 - 19889 (+)
Gene ID: HRGMv2_2504_17_21
Type: TC
Location: 19902 - 20579 (+)
Gene ID: HRGMv2_2504_17_22
Type: TC
Location: 20589 - 21248 (+)
Gene ID: HRGMv2_2504_17_23
Type: pfam
Location: 21550 - 22200 (-)
Gene ID: HRGMv2_2504_17_24
Type: TC
Location: 22200 - 22934 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List