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Cluster: HRGMv2_2504_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2504_14 HRGMv2_2504_14_29 28139 29026 - 2.A.4.1.7
STP HRGMv2_2504_14 HRGMv2_2504_14_30 29159 29713 + TetR_N
NULL(UNKNOWN) HRGMv2_2504_14 HRGMv2_2504_14_31 29740 30072 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2504_14 HRGMv2_2504_14_32 30108 30899 - 4.B.1.1.2
TC HRGMv2_2504_14 HRGMv2_2504_14_33 31237 32757 - 3.A.1.12.8
TC HRGMv2_2504_14 HRGMv2_2504_14_34 32750 33478 - 3.A.1.12.8
pfam HRGMv2_2504_14 HRGMv2_2504_14_35 33493 34257 - SnoaL | SnoaL_2 | SnoaL_2
TF HRGMv2_2504_14 HRGMv2_2504_14_36 34261 34704 - MarR
TC HRGMv2_2504_14 HRGMv2_2504_14_37 34848 36119 - 9.B.67.1.2
CAZyme HRGMv2_2504_14 HRGMv2_2504_14_38 36174 37616 - GH13_18
TC HRGMv2_2504_14 HRGMv2_2504_14_39 37822 38655 - 3.A.1.1.28
TC HRGMv2_2504_14 HRGMv2_2504_14_40 38672 39544 - 3.A.1.1.28
TC HRGMv2_2504_14 HRGMv2_2504_14_41 39563 40813 - 3.A.1.1.28
CAZyme HRGMv2_2504_14 HRGMv2_2504_14_42 40848 43010 - GH36
Gene ID: HRGMv2_2504_14_29
Type: TC
Location: 28139 - 29026 (-)
Gene ID: HRGMv2_2504_14_30
Type: STP
Location: 29159 - 29713 (+)
Gene ID: HRGMv2_2504_14_31
Type:
Location: 29740 - 30072 (+)
Gene ID: HRGMv2_2504_14_32
Type: TC
Location: 30108 - 30899 (-)
Gene ID: HRGMv2_2504_14_33
Type: TC
Location: 31237 - 32757 (-)
Gene ID: HRGMv2_2504_14_34
Type: TC
Location: 32750 - 33478 (-)
Gene ID: HRGMv2_2504_14_35
Type: pfam
Location: 33493 - 34257 (-)
Gene ID: HRGMv2_2504_14_36
Type: TF
Location: 34261 - 34704 (-)
Gene ID: HRGMv2_2504_14_37
Type: TC
Location: 34848 - 36119 (-)
Gene ID: HRGMv2_2504_14_38
Type: CAZyme
Location: 36174 - 37616 (-)
Gene ID: HRGMv2_2504_14_39
Type: TC
Location: 37822 - 38655 (-)
Gene ID: HRGMv2_2504_14_40
Type: TC
Location: 38672 - 39544 (-)
Gene ID: HRGMv2_2504_14_41
Type: TC
Location: 39563 - 40813 (-)
Gene ID: HRGMv2_2504_14_42
Type: CAZyme
Location: 40848 - 43010 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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