dbCAN Logo

Cluster: HRGMv2_2504_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2504_9 HRGMv2_2504_9_12 10521 11432 - 2.A.7.3.12
CAZyme HRGMv2_2504_9 HRGMv2_2504_9_13 11510 13990 - GT51
pfam HRGMv2_2504_9 HRGMv2_2504_9_14 14131 15387 + tRNA-synt_1b | S4 | SYY_C-terminal
TC HRGMv2_2504_9 HRGMv2_2504_9_15 15465 17528 - 3.A.3.32.6
pfam HRGMv2_2504_9 HRGMv2_2504_9_16 17530 17808 - DUF6110
pfam HRGMv2_2504_9 HRGMv2_2504_9_17 17960 18808 + Methyltransf_11 | Methyltransf_25 | Methyltransf_31 | Zn_ribbon_RlmA
CAZyme HRGMv2_2504_9 HRGMv2_2504_9_18 19358 21616 - GT35
CAZyme HRGMv2_2504_9 HRGMv2_2504_9_19 21641 23158 - GH77
TC HRGMv2_2504_9 HRGMv2_2504_9_20 23634 24902 + 3.A.1.1.26
TC HRGMv2_2504_9 HRGMv2_2504_9_21 25027 26319 + 3.A.1.1.26
TC HRGMv2_2504_9 HRGMv2_2504_9_22 26321 27163 + 3.A.1.1.26
NULL(UNKNOWN) HRGMv2_2504_9 HRGMv2_2504_9_23 27405 28211 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_2504_9 HRGMv2_2504_9_24 28221 29207 + LacI
TC HRGMv2_2504_9 HRGMv2_2504_9_25 29241 30182 - 2.A.115.1.1
Gene ID: HRGMv2_2504_9_12
Type: TC
Location: 10521 - 11432 (-)
Gene ID: HRGMv2_2504_9_13
Type: CAZyme
Location: 11510 - 13990 (-)
Gene ID: HRGMv2_2504_9_14
Type: pfam
Location: 14131 - 15387 (+)
Gene ID: HRGMv2_2504_9_15
Type: TC
Location: 15465 - 17528 (-)
Gene ID: HRGMv2_2504_9_16
Type: pfam
Location: 17530 - 17808 (-)
Gene ID: HRGMv2_2504_9_17
Type: pfam
Location: 17960 - 18808 (+)
Gene ID: HRGMv2_2504_9_18
Type: CAZyme
Location: 19358 - 21616 (-)
Gene ID: HRGMv2_2504_9_19
Type: CAZyme
Location: 21641 - 23158 (-)
Gene ID: HRGMv2_2504_9_20
Type: TC
Location: 23634 - 24902 (+)
Gene ID: HRGMv2_2504_9_21
Type: TC
Location: 25027 - 26319 (+)
Gene ID: HRGMv2_2504_9_22
Type: TC
Location: 26321 - 27163 (+)
Gene ID: HRGMv2_2504_9_23
Type:
Location: 27405 - 28211 (+)
Gene ID: HRGMv2_2504_9_24
Type: TF
Location: 28221 - 29207 (+)
Gene ID: HRGMv2_2504_9_25
Type: TC
Location: 29241 - 30182 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List