dbCAN Logo

Cluster: HRGMv2_2504_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2504_1 HRGMv2_2504_1_12 12331 14217 - 4.A.1.2.12
CAZyme HRGMv2_2504_1 HRGMv2_2504_1_13 14596 16050 + GH32
TF HRGMv2_2504_1 HRGMv2_2504_1_14 16031 16996 + LacI
TC HRGMv2_2504_1 HRGMv2_2504_1_15 17032 18306 - 2.A.6.6.11
pfam HRGMv2_2504_1 HRGMv2_2504_1_16 18306 19478 - Chal_sti_synt_N | HMG_CoA_synt_N | HMG_CoA_synt_C | HMG_CoA_synt_C
pfam HRGMv2_2504_1 HRGMv2_2504_1_17 19597 20052 - ThrE_2
TC HRGMv2_2504_1 HRGMv2_2504_1_18 20054 20812 - 2.A.79.1.5
TC HRGMv2_2504_1 HRGMv2_2504_1_19 20898 22778 - 9.B.106.2.2
Gene ID: HRGMv2_2504_1_12
Type: TC
Location: 12331 - 14217 (-)
Gene ID: HRGMv2_2504_1_13
Type: CAZyme
Location: 14596 - 16050 (+)
Gene ID: HRGMv2_2504_1_14
Type: TF
Location: 16031 - 16996 (+)
Gene ID: HRGMv2_2504_1_15
Type: TC
Location: 17032 - 18306 (-)
Gene ID: HRGMv2_2504_1_16
Type: pfam
Location: 18306 - 19478 (-)
Gene ID: HRGMv2_2504_1_17
Type: pfam
Location: 19597 - 20052 (-)
Gene ID: HRGMv2_2504_1_18
Type: TC
Location: 20054 - 20812 (-)
Gene ID: HRGMv2_2504_1_19
Type: TC
Location: 20898 - 22778 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List