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Cluster: HRGMv2_2500_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2500_5 HRGMv2_2500_5_42 36723 37367 - 9.B.28.1.4
pfam HRGMv2_2500_5 HRGMv2_2500_5_43 37388 37840 - DUF386
TC HRGMv2_2500_5 HRGMv2_2500_5_44 38286 39125 - 3.A.1.1.34
TC HRGMv2_2500_5 HRGMv2_2500_5_45 39141 40028 - 3.A.1.1.20
STP HRGMv2_2500_5 HRGMv2_2500_5_46 40227 41555 - SBP_bac_1
pfam HRGMv2_2500_5 HRGMv2_2500_5_47 41670 42368 - NanE
CAZyme HRGMv2_2500_5 HRGMv2_2500_5_48 42602 45994 - CBM40 | GH33
CAZyme HRGMv2_2500_5 HRGMv2_2500_5_49 46332 47312 - CE7
Gene ID: HRGMv2_2500_5_42
Type: TC
Location: 36723 - 37367 (-)
Gene ID: HRGMv2_2500_5_43
Type: pfam
Location: 37388 - 37840 (-)
Gene ID: HRGMv2_2500_5_44
Type: TC
Location: 38286 - 39125 (-)
Gene ID: HRGMv2_2500_5_45
Type: TC
Location: 39141 - 40028 (-)
Gene ID: HRGMv2_2500_5_46
Type: STP
Location: 40227 - 41555 (-)
Gene ID: HRGMv2_2500_5_47
Type: pfam
Location: 41670 - 42368 (-)
Gene ID: HRGMv2_2500_5_48
Type: CAZyme
Location: 42602 - 45994 (-)
Gene ID: HRGMv2_2500_5_49
Type: CAZyme
Location: 46332 - 47312 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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