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Cluster: HRGMv2_2500_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2500_2 HRGMv2_2500_2_187 188293 189216 - 3.A.1.1.29
TC HRGMv2_2500_2 HRGMv2_2500_2_188 189230 190159 - 3.A.1.1.10
CAZyme HRGMv2_2500_2 HRGMv2_2500_2_189 190358 192238 - GH20
pfam HRGMv2_2500_2 HRGMv2_2500_2_190 192232 193101 - ROK
CAZyme HRGMv2_2500_2 HRGMv2_2500_2_191 193200 195845 - GH38
CAZyme HRGMv2_2500_2 HRGMv2_2500_2_192 195902 197182 - GH125
CAZyme HRGMv2_2500_2 HRGMv2_2500_2_193 197353 199440 + GH92
CAZyme HRGMv2_2500_2 HRGMv2_2500_2_194 199477 201156 - GH29
TC HRGMv2_2500_2 HRGMv2_2500_2_195 201681 203186 - 3.A.1.15.3
TC HRGMv2_2500_2 HRGMv2_2500_2_196 203196 204002 - 3.A.1.15.3
TC HRGMv2_2500_2 HRGMv2_2500_2_197 203995 204699 - 3.A.1.15.3
Gene ID: HRGMv2_2500_2_187
Type: TC
Location: 188293 - 189216 (-)
Gene ID: HRGMv2_2500_2_188
Type: TC
Location: 189230 - 190159 (-)
Gene ID: HRGMv2_2500_2_189
Type: CAZyme
Location: 190358 - 192238 (-)
Gene ID: HRGMv2_2500_2_190
Type: pfam
Location: 192232 - 193101 (-)
Gene ID: HRGMv2_2500_2_191
Type: CAZyme
Location: 193200 - 195845 (-)
Gene ID: HRGMv2_2500_2_192
Type: CAZyme
Location: 195902 - 197182 (-)
Gene ID: HRGMv2_2500_2_193
Type: CAZyme
Location: 197353 - 199440 (+)
Gene ID: HRGMv2_2500_2_194
Type: CAZyme
Location: 199477 - 201156 (-)
Gene ID: HRGMv2_2500_2_195
Type: TC
Location: 201681 - 203186 (-)
Gene ID: HRGMv2_2500_2_196
Type: TC
Location: 203196 - 204002 (-)
Gene ID: HRGMv2_2500_2_197
Type: TC
Location: 203995 - 204699 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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