Cluster: HRGMv2_2500_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2500
- CGC Family ID: CGCFAM_01444
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2500_2 | HRGMv2_2500_2_29 | 36908 | 40624 | + | CBM41 | CBM41 | GH13_12 |
| TC | HRGMv2_2500_2 | HRGMv2_2500_2_30 | 40826 | 41590 | - | 3.A.1.3.14 |
| TC | HRGMv2_2500_2 | HRGMv2_2500_2_31 | 41600 | 42322 | - | 3.A.1.3.13 |
| TC | HRGMv2_2500_2 | HRGMv2_2500_2_32 | 42326 | 43018 | - | 3.A.1.3.13 |
| TC | HRGMv2_2500_2 | HRGMv2_2500_2_33 | 43051 | 43929 | - | 3.A.1.3.14 |
Gene ID: HRGMv2_2500_2_29
Type: CAZyme
Location: 36908 - 40624 (+)
Type: CAZyme
Location: 36908 - 40624 (+)
Gene ID: HRGMv2_2500_2_30
Type: TC
Location: 40826 - 41590 (-)
Type: TC
Location: 40826 - 41590 (-)
Gene ID: HRGMv2_2500_2_31
Type: TC
Location: 41600 - 42322 (-)
Type: TC
Location: 41600 - 42322 (-)
Gene ID: HRGMv2_2500_2_32
Type: TC
Location: 42326 - 43018 (-)
Type: TC
Location: 42326 - 43018 (-)
Gene ID: HRGMv2_2500_2_33
Type: TC
Location: 43051 - 43929 (-)
Type: TC
Location: 43051 - 43929 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus oralis_S
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.