dbCAN Logo

Cluster: HRGMv2_2500_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2500_1 HRGMv2_2500_1_234 240970 242022 - GT113
STP HRGMv2_2500_1 HRGMv2_2500_1_235 242050 243153 - Pyr_redox
TC HRGMv2_2500_1 HRGMv2_2500_1_236 243163 244575 - 2.A.66.2.16
NULL(UNKNOWN) HRGMv2_2500_1 HRGMv2_2500_1_237 244572 245732 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2500_1 HRGMv2_2500_1_238 245770 246738 - GT2
pfam HRGMv2_2500_1 HRGMv2_2500_1_239 246772 247773 - Stealth_CR2 | Stealth_CR1 | Stealth_CR3
NULL(UNKNOWN) HRGMv2_2500_1 HRGMv2_2500_1_240 247788 248789 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2500_1 HRGMv2_2500_1_241 248798 249949 - GT4
CAZyme HRGMv2_2500_1 HRGMv2_2500_1_242 249953 251125 - GT4
TC HRGMv2_2500_1 HRGMv2_2500_1_243 251156 252523 - 9.B.18.1.2
TC HRGMv2_2500_1 HRGMv2_2500_1_244 252546 253238 - 8.A.3.2.2
TC HRGMv2_2500_1 HRGMv2_2500_1_245 253248 253940 - 8.A.3.2.3
pfam HRGMv2_2500_1 HRGMv2_2500_1_246 253949 254680 - CpsB_CapC
pfam HRGMv2_2500_1 HRGMv2_2500_1_247 254682 256127 - DNA_PPF | LytR_cpsA_psr
TC HRGMv2_2500_1 HRGMv2_2500_1_248 256313 258274 - 3.A.1.5.19
TC HRGMv2_2500_1 HRGMv2_2500_1_249 258421 260388 - 3.A.1.5.25
CAZyme HRGMv2_2500_1 HRGMv2_2500_1_250 260546 262156 - GH13_31
pfam HRGMv2_2500_1 HRGMv2_2500_1_251 262309 263793 + DUF1846 | DUF1846_C
pfam HRGMv2_2500_1 HRGMv2_2500_1_252 263889 264371 + LuxS
TC HRGMv2_2500_1 HRGMv2_2500_1_253 264430 266535 - 3.A.9.1.2
Gene ID: HRGMv2_2500_1_234
Type: CAZyme
Location: 240970 - 242022 (-)
Gene ID: HRGMv2_2500_1_235
Type: STP
Location: 242050 - 243153 (-)
Gene ID: HRGMv2_2500_1_236
Type: TC
Location: 243163 - 244575 (-)
Gene ID: HRGMv2_2500_1_237
Type:
Location: 244572 - 245732 (-)
Gene ID: HRGMv2_2500_1_238
Type: CAZyme
Location: 245770 - 246738 (-)
Gene ID: HRGMv2_2500_1_239
Type: pfam
Location: 246772 - 247773 (-)
Gene ID: HRGMv2_2500_1_240
Type:
Location: 247788 - 248789 (-)
Gene ID: HRGMv2_2500_1_241
Type: CAZyme
Location: 248798 - 249949 (-)
Gene ID: HRGMv2_2500_1_242
Type: CAZyme
Location: 249953 - 251125 (-)
Gene ID: HRGMv2_2500_1_243
Type: TC
Location: 251156 - 252523 (-)
Gene ID: HRGMv2_2500_1_244
Type: TC
Location: 252546 - 253238 (-)
Gene ID: HRGMv2_2500_1_245
Type: TC
Location: 253248 - 253940 (-)
Gene ID: HRGMv2_2500_1_246
Type: pfam
Location: 253949 - 254680 (-)
Gene ID: HRGMv2_2500_1_247
Type: pfam
Location: 254682 - 256127 (-)
Gene ID: HRGMv2_2500_1_248
Type: TC
Location: 256313 - 258274 (-)
Gene ID: HRGMv2_2500_1_249
Type: TC
Location: 258421 - 260388 (-)
Gene ID: HRGMv2_2500_1_250
Type: CAZyme
Location: 260546 - 262156 (-)
Gene ID: HRGMv2_2500_1_251
Type: pfam
Location: 262309 - 263793 (+)
Gene ID: HRGMv2_2500_1_252
Type: pfam
Location: 263889 - 264371 (+)
Gene ID: HRGMv2_2500_1_253
Type: TC
Location: 264430 - 266535 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List