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Cluster: HRGMv2_2500_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2500_1 HRGMv2_2500_1_128 126114 128009 - 4.A.1.2.12
CAZyme HRGMv2_2500_1 HRGMv2_2500_1_129 128391 129845 + GH32
TF HRGMv2_2500_1 HRGMv2_2500_1_130 129826 130791 + LacI
TC HRGMv2_2500_1 HRGMv2_2500_1_131 130943 132217 - 2.A.6.6.11
pfam HRGMv2_2500_1 HRGMv2_2500_1_132 132217 133389 - Chal_sti_synt_N | HMG_CoA_synt_N | HMG_CoA_synt_C | HMG_CoA_synt_C
pfam HRGMv2_2500_1 HRGMv2_2500_1_133 133508 133963 - ThrE_2
TC HRGMv2_2500_1 HRGMv2_2500_1_134 133965 134723 - 2.A.79.1.5
TC HRGMv2_2500_1 HRGMv2_2500_1_135 134817 136724 - 9.B.106.2.2
Gene ID: HRGMv2_2500_1_128
Type: TC
Location: 126114 - 128009 (-)
Gene ID: HRGMv2_2500_1_129
Type: CAZyme
Location: 128391 - 129845 (+)
Gene ID: HRGMv2_2500_1_130
Type: TF
Location: 129826 - 130791 (+)
Gene ID: HRGMv2_2500_1_131
Type: TC
Location: 130943 - 132217 (-)
Gene ID: HRGMv2_2500_1_132
Type: pfam
Location: 132217 - 133389 (-)
Gene ID: HRGMv2_2500_1_133
Type: pfam
Location: 133508 - 133963 (-)
Gene ID: HRGMv2_2500_1_134
Type: TC
Location: 133965 - 134723 (-)
Gene ID: HRGMv2_2500_1_135
Type: TC
Location: 134817 - 136724 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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