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Cluster: HRGMv2_2500_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2500_11 HRGMv2_2500_11_5 5987 10717 - GH85
TC HRGMv2_2500_11 HRGMv2_2500_11_6 11050 12681 + 2.A.58.2.2
pfam HRGMv2_2500_11 HRGMv2_2500_11_7 12928 13224 - EntA_Immun
peptidase HRGMv2_2500_11 HRGMv2_2500_11_8 13246 14310 - M42.001
TC HRGMv2_2500_11 HRGMv2_2500_11_9 14547 15506 + 3.A.1.14.13
pfam HRGMv2_2500_11 HRGMv2_2500_11_10 15496 16452 + FecCD
TC HRGMv2_2500_11 HRGMv2_2500_11_11 16449 17201 + 3.A.1.14.3
TC HRGMv2_2500_11 HRGMv2_2500_11_12 17300 18271 + 3.A.1.14.15
Gene ID: HRGMv2_2500_11_5
Type: CAZyme
Location: 5987 - 10717 (-)
Gene ID: HRGMv2_2500_11_6
Type: TC
Location: 11050 - 12681 (+)
Gene ID: HRGMv2_2500_11_7
Type: pfam
Location: 12928 - 13224 (-)
Gene ID: HRGMv2_2500_11_8
Type: peptidase
Location: 13246 - 14310 (-)
Gene ID: HRGMv2_2500_11_9
Type: TC
Location: 14547 - 15506 (+)
Gene ID: HRGMv2_2500_11_10
Type: pfam
Location: 15496 - 16452 (+)
Gene ID: HRGMv2_2500_11_11
Type: TC
Location: 16449 - 17201 (+)
Gene ID: HRGMv2_2500_11_12
Type: TC
Location: 17300 - 18271 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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