Cluster: HRGMv2_2500_CGC18
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2500
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2500_10 | HRGMv2_2500_10_53 | 52376 | 53824 | + | GH13_5 |
| pfam | HRGMv2_2500_10 | HRGMv2_2500_10_54 | 53912 | 56530 | - | tRNA-synt_2c | DHHA1 | tRNA_SAD |
| pfam | HRGMv2_2500_10 | HRGMv2_2500_10_55 | 56552 | 57037 | - | LOR |
| TC | HRGMv2_2500_10 | HRGMv2_2500_10_56 | 57295 | 58365 | - | 3.A.1.11.7 |
| TC | HRGMv2_2500_10 | HRGMv2_2500_10_57 | 58362 | 59135 | - | 3.A.1.11.7 |
| TC | HRGMv2_2500_10 | HRGMv2_2500_10_58 | 59132 | 59938 | - | 3.A.1.11.7 |
| TC | HRGMv2_2500_10 | HRGMv2_2500_10_59 | 59919 | 61076 | - | 3.A.1.11.7 |
Gene ID: HRGMv2_2500_10_53
Type: CAZyme
Location: 52376 - 53824 (+)
Type: CAZyme
Location: 52376 - 53824 (+)
Gene ID: HRGMv2_2500_10_54
Type: pfam
Location: 53912 - 56530 (-)
Type: pfam
Location: 53912 - 56530 (-)
Gene ID: HRGMv2_2500_10_55
Type: pfam
Location: 56552 - 57037 (-)
Type: pfam
Location: 56552 - 57037 (-)
Gene ID: HRGMv2_2500_10_56
Type: TC
Location: 57295 - 58365 (-)
Type: TC
Location: 57295 - 58365 (-)
Gene ID: HRGMv2_2500_10_57
Type: TC
Location: 58362 - 59135 (-)
Type: TC
Location: 58362 - 59135 (-)
Gene ID: HRGMv2_2500_10_58
Type: TC
Location: 59132 - 59938 (-)
Type: TC
Location: 59132 - 59938 (-)
Gene ID: HRGMv2_2500_10_59
Type: TC
Location: 59919 - 61076 (-)
Type: TC
Location: 59919 - 61076 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus oralis_S
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2500_10_58 | vegan > omnivore | 3.64158 | 0.01604 |