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Cluster: HRGMv2_2500_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2500_6 HRGMv2_2500_6_88 87320 87724 - 4.A.6.1.18
TC HRGMv2_2500_6 HRGMv2_2500_6_89 87728 88549 - 4.A.6.1.18
TC HRGMv2_2500_6 HRGMv2_2500_6_90 88536 89441 - 4.A.6.1.18
TC HRGMv2_2500_6 HRGMv2_2500_6_91 89468 89944 - 4.A.6.1.18
CAZyme HRGMv2_2500_6 HRGMv2_2500_6_92 89941 91728 - GH35
TF HRGMv2_2500_6 HRGMv2_2500_6_93 92050 92766 + GntR
CAZyme HRGMv2_2500_6 HRGMv2_2500_6_94 93069 96836 + GH20 | GH20
Gene ID: HRGMv2_2500_6_88
Type: TC
Location: 87320 - 87724 (-)
Gene ID: HRGMv2_2500_6_89
Type: TC
Location: 87728 - 88549 (-)
Gene ID: HRGMv2_2500_6_90
Type: TC
Location: 88536 - 89441 (-)
Gene ID: HRGMv2_2500_6_91
Type: TC
Location: 89468 - 89944 (-)
Gene ID: HRGMv2_2500_6_92
Type: CAZyme
Location: 89941 - 91728 (-)
Gene ID: HRGMv2_2500_6_93
Type: TF
Location: 92050 - 92766 (+)
Gene ID: HRGMv2_2500_6_94
Type: CAZyme
Location: 93069 - 96836 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2500_6_89 vegan > omnivore 1.51146 0.01604

🧭 Explore Read Mapping of CGC

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