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Cluster: HRGMv2_2500_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2500_6 HRGMv2_2500_6_13 13427 14338 - 2.A.7.3.12
CAZyme HRGMv2_2500_6 HRGMv2_2500_6_14 14416 16929 - GT51
pfam HRGMv2_2500_6 HRGMv2_2500_6_15 17070 18326 + tRNA-synt_1b | S4 | SYY_C-terminal
TC HRGMv2_2500_6 HRGMv2_2500_6_16 18404 20464 - 3.A.3.32.6
pfam HRGMv2_2500_6 HRGMv2_2500_6_17 20466 20744 - DUF6110
pfam HRGMv2_2500_6 HRGMv2_2500_6_18 20896 21744 + MTS | Methyltransf_11 | Methyltransf_25 | Methyltransf_31 | Zn_ribbon_RlmA
CAZyme HRGMv2_2500_6 HRGMv2_2500_6_19 21807 24065 - GT35
CAZyme HRGMv2_2500_6 HRGMv2_2500_6_20 24090 25607 - GH77
TC HRGMv2_2500_6 HRGMv2_2500_6_21 26084 27352 + 3.A.1.1.26
TC HRGMv2_2500_6 HRGMv2_2500_6_22 27477 28769 + 3.A.1.1.26
TC HRGMv2_2500_6 HRGMv2_2500_6_23 28771 29613 + 3.A.1.1.26
NULL(UNKNOWN) HRGMv2_2500_6 HRGMv2_2500_6_24 29867 30673 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_2500_6 HRGMv2_2500_6_25 30683 31669 + LacI
TC HRGMv2_2500_6 HRGMv2_2500_6_26 31703 32644 - 2.A.115.1.1
Gene ID: HRGMv2_2500_6_13
Type: TC
Location: 13427 - 14338 (-)
Gene ID: HRGMv2_2500_6_14
Type: CAZyme
Location: 14416 - 16929 (-)
Gene ID: HRGMv2_2500_6_15
Type: pfam
Location: 17070 - 18326 (+)
Gene ID: HRGMv2_2500_6_16
Type: TC
Location: 18404 - 20464 (-)
Gene ID: HRGMv2_2500_6_17
Type: pfam
Location: 20466 - 20744 (-)
Gene ID: HRGMv2_2500_6_18
Type: pfam
Location: 20896 - 21744 (+)
Gene ID: HRGMv2_2500_6_19
Type: CAZyme
Location: 21807 - 24065 (-)
Gene ID: HRGMv2_2500_6_20
Type: CAZyme
Location: 24090 - 25607 (-)
Gene ID: HRGMv2_2500_6_21
Type: TC
Location: 26084 - 27352 (+)
Gene ID: HRGMv2_2500_6_22
Type: TC
Location: 27477 - 28769 (+)
Gene ID: HRGMv2_2500_6_23
Type: TC
Location: 28771 - 29613 (+)
Gene ID: HRGMv2_2500_6_24
Type:
Location: 29867 - 30673 (+)
Gene ID: HRGMv2_2500_6_25
Type: TF
Location: 30683 - 31669 (+)
Gene ID: HRGMv2_2500_6_26
Type: TC
Location: 31703 - 32644 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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