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Cluster: HRGMv2_2500_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2500_5 HRGMv2_2500_5_138 125540 126427 - 2.A.4.1.7
STP HRGMv2_2500_5 HRGMv2_2500_5_139 126560 127114 + TetR_N
NULL(UNKNOWN) HRGMv2_2500_5 HRGMv2_2500_5_140 127141 127473 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2500_5 HRGMv2_2500_5_141 127509 128246 - 4.B.1.1.2
TC HRGMv2_2500_5 HRGMv2_2500_5_142 128637 130157 - 3.A.1.12.8
TC HRGMv2_2500_5 HRGMv2_2500_5_143 130150 130878 - 3.A.1.12.8
TF HRGMv2_2500_5 HRGMv2_2500_5_144 130951 131394 - MarR
TC HRGMv2_2500_5 HRGMv2_2500_5_145 131538 132809 - 9.B.67.1.2
CAZyme HRGMv2_2500_5 HRGMv2_2500_5_146 132863 134305 - GH13_18
TC HRGMv2_2500_5 HRGMv2_2500_5_147 134502 135335 - 3.A.1.1.28
TC HRGMv2_2500_5 HRGMv2_2500_5_148 135352 136224 - 3.A.1.1.28
TC HRGMv2_2500_5 HRGMv2_2500_5_149 136243 137493 - 3.A.1.1.28
CAZyme HRGMv2_2500_5 HRGMv2_2500_5_150 137525 139690 - GH36
Gene ID: HRGMv2_2500_5_138
Type: TC
Location: 125540 - 126427 (-)
Gene ID: HRGMv2_2500_5_139
Type: STP
Location: 126560 - 127114 (+)
Gene ID: HRGMv2_2500_5_140
Type:
Location: 127141 - 127473 (+)
Gene ID: HRGMv2_2500_5_141
Type: TC
Location: 127509 - 128246 (-)
Gene ID: HRGMv2_2500_5_142
Type: TC
Location: 128637 - 130157 (-)
Gene ID: HRGMv2_2500_5_143
Type: TC
Location: 130150 - 130878 (-)
Gene ID: HRGMv2_2500_5_144
Type: TF
Location: 130951 - 131394 (-)
Gene ID: HRGMv2_2500_5_145
Type: TC
Location: 131538 - 132809 (-)
Gene ID: HRGMv2_2500_5_146
Type: CAZyme
Location: 132863 - 134305 (-)
Gene ID: HRGMv2_2500_5_147
Type: TC
Location: 134502 - 135335 (-)
Gene ID: HRGMv2_2500_5_148
Type: TC
Location: 135352 - 136224 (-)
Gene ID: HRGMv2_2500_5_149
Type: TC
Location: 136243 - 137493 (-)
Gene ID: HRGMv2_2500_5_150
Type: CAZyme
Location: 137525 - 139690 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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