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Cluster: HRGMv2_2500_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2500_1 HRGMv2_2500_1_75 67206 67985 - CE1
pfam HRGMv2_2500_1 HRGMv2_2500_1_76 68054 69715 - Lactamase_B | RMMBL | Lactamase_B_2 | RNase_J_C | RNase_J_b_CASP
CAZyme HRGMv2_2500_1 HRGMv2_2500_1_77 70227 70874 - CBM50
pfam HRGMv2_2500_1 HRGMv2_2500_1_78 71158 73434 - DHH | DHHA1 | ssDNA-exonuc_C | RecJ_OB
TC HRGMv2_2500_1 HRGMv2_2500_1_79 73555 74313 + 3.A.1.3.9
TC HRGMv2_2500_1 HRGMv2_2500_1_80 74324 75118 + 3.A.1.3.16
TC HRGMv2_2500_1 HRGMv2_2500_1_81 75131 75808 + 3.A.1.3.16
TC HRGMv2_2500_1 HRGMv2_2500_1_82 75818 76477 + 3.A.1.3.18
Gene ID: HRGMv2_2500_1_75
Type: CAZyme
Location: 67206 - 67985 (-)
Gene ID: HRGMv2_2500_1_76
Type: pfam
Location: 68054 - 69715 (-)
Gene ID: HRGMv2_2500_1_77
Type: CAZyme
Location: 70227 - 70874 (-)
Gene ID: HRGMv2_2500_1_78
Type: pfam
Location: 71158 - 73434 (-)
Gene ID: HRGMv2_2500_1_79
Type: TC
Location: 73555 - 74313 (+)
Gene ID: HRGMv2_2500_1_80
Type: TC
Location: 74324 - 75118 (+)
Gene ID: HRGMv2_2500_1_81
Type: TC
Location: 75131 - 75808 (+)
Gene ID: HRGMv2_2500_1_82
Type: TC
Location: 75818 - 76477 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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