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Cluster: HRGMv2_2499_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2499_5 HRGMv2_2499_5_20 19485 20396 - 2.A.7.3.12
CAZyme HRGMv2_2499_5 HRGMv2_2499_5_21 20474 22981 - GT51
pfam HRGMv2_2499_5 HRGMv2_2499_5_22 23122 24378 + tRNA-synt_1b | S4 | SYY_C-terminal
TC HRGMv2_2499_5 HRGMv2_2499_5_23 24456 26516 - 3.A.3.32.6
pfam HRGMv2_2499_5 HRGMv2_2499_5_24 26518 26796 - DUF6110
pfam HRGMv2_2499_5 HRGMv2_2499_5_25 26948 27796 + Methyltransf_11 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 | Zn_ribbon_RlmA
CAZyme HRGMv2_2499_5 HRGMv2_2499_5_26 28364 30622 - GT35
CAZyme HRGMv2_2499_5 HRGMv2_2499_5_27 30647 32164 - GH77
TC HRGMv2_2499_5 HRGMv2_2499_5_28 32638 33909 + 3.A.1.1.26
TC HRGMv2_2499_5 HRGMv2_2499_5_29 34036 35328 + 3.A.1.1.26
TC HRGMv2_2499_5 HRGMv2_2499_5_30 35330 36172 + 3.A.1.1.26
NULL(UNKNOWN) HRGMv2_2499_5 HRGMv2_2499_5_31 36347 37153 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_2499_5 HRGMv2_2499_5_32 37163 38149 + LacI
TC HRGMv2_2499_5 HRGMv2_2499_5_33 38183 39124 - 2.A.115.1.1
Gene ID: HRGMv2_2499_5_20
Type: TC
Location: 19485 - 20396 (-)
Gene ID: HRGMv2_2499_5_21
Type: CAZyme
Location: 20474 - 22981 (-)
Gene ID: HRGMv2_2499_5_22
Type: pfam
Location: 23122 - 24378 (+)
Gene ID: HRGMv2_2499_5_23
Type: TC
Location: 24456 - 26516 (-)
Gene ID: HRGMv2_2499_5_24
Type: pfam
Location: 26518 - 26796 (-)
Gene ID: HRGMv2_2499_5_25
Type: pfam
Location: 26948 - 27796 (+)
Gene ID: HRGMv2_2499_5_26
Type: CAZyme
Location: 28364 - 30622 (-)
Gene ID: HRGMv2_2499_5_27
Type: CAZyme
Location: 30647 - 32164 (-)
Gene ID: HRGMv2_2499_5_28
Type: TC
Location: 32638 - 33909 (+)
Gene ID: HRGMv2_2499_5_29
Type: TC
Location: 34036 - 35328 (+)
Gene ID: HRGMv2_2499_5_30
Type: TC
Location: 35330 - 36172 (+)
Gene ID: HRGMv2_2499_5_31
Type:
Location: 36347 - 37153 (+)
Gene ID: HRGMv2_2499_5_32
Type: TF
Location: 37163 - 38149 (+)
Gene ID: HRGMv2_2499_5_33
Type: TC
Location: 38183 - 39124 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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