Cluster: HRGMv2_2499_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2499
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2499_1 | HRGMv2_2499_1_29 | 23340 | 24497 | + | 3.A.1.11.7 |
| TC | HRGMv2_2499_1 | HRGMv2_2499_1_30 | 24478 | 25284 | + | 3.A.1.11.7 |
| TC | HRGMv2_2499_1 | HRGMv2_2499_1_31 | 25281 | 26054 | + | 3.A.1.11.7 |
| TC | HRGMv2_2499_1 | HRGMv2_2499_1_32 | 26051 | 27121 | + | 3.A.1.11.7 |
| pfam | HRGMv2_2499_1 | HRGMv2_2499_1_33 | 27379 | 27864 | + | LOR |
| pfam | HRGMv2_2499_1 | HRGMv2_2499_1_34 | 27885 | 30503 | + | tRNA-synt_2c | DHHA1 | tRNA_SAD |
| CAZyme | HRGMv2_2499_1 | HRGMv2_2499_1_35 | 30591 | 32039 | - | GH13_5 |
Gene ID: HRGMv2_2499_1_29
Type: TC
Location: 23340 - 24497 (+)
Type: TC
Location: 23340 - 24497 (+)
Gene ID: HRGMv2_2499_1_30
Type: TC
Location: 24478 - 25284 (+)
Type: TC
Location: 24478 - 25284 (+)
Gene ID: HRGMv2_2499_1_31
Type: TC
Location: 25281 - 26054 (+)
Type: TC
Location: 25281 - 26054 (+)
Gene ID: HRGMv2_2499_1_32
Type: TC
Location: 26051 - 27121 (+)
Type: TC
Location: 26051 - 27121 (+)
Gene ID: HRGMv2_2499_1_33
Type: pfam
Location: 27379 - 27864 (+)
Type: pfam
Location: 27379 - 27864 (+)
Gene ID: HRGMv2_2499_1_34
Type: pfam
Location: 27885 - 30503 (+)
Type: pfam
Location: 27885 - 30503 (+)
Gene ID: HRGMv2_2499_1_35
Type: CAZyme
Location: 30591 - 32039 (-)
Type: CAZyme
Location: 30591 - 32039 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus oralis_BY
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.