Cluster: HRGMv2_2498_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate: alpha-glucan
- Genome ID: HRGMv2_2498
- CGC Family ID: CGCFAM_00580
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2498_12 | HRGMv2_2498_12_26 | 27541 | 27795 | - | 3.A.1.1.26 |
| TC | HRGMv2_2498_12 | HRGMv2_2498_12_27 | 27823 | 28383 | - | 3.A.1.1.26 |
| TC | HRGMv2_2498_12 | HRGMv2_2498_12_28 | 28385 | 28936 | - | 3.A.1.1.26 |
| TC | HRGMv2_2498_12 | HRGMv2_2498_12_29 | 28929 | 29675 | - | 3.A.1.1.26 |
| CAZyme | HRGMv2_2498_12 | HRGMv2_2498_12_30 | 29960 | 31477 | + | GH77 |
| CAZyme | HRGMv2_2498_12 | HRGMv2_2498_12_31 | 31502 | 33760 | + | GT35 |
Gene ID: HRGMv2_2498_12_26
Type: TC
Location: 27541 - 27795 (-)
Type: TC
Location: 27541 - 27795 (-)
Gene ID: HRGMv2_2498_12_27
Type: TC
Location: 27823 - 28383 (-)
Type: TC
Location: 27823 - 28383 (-)
Gene ID: HRGMv2_2498_12_28
Type: TC
Location: 28385 - 28936 (-)
Type: TC
Location: 28385 - 28936 (-)
Gene ID: HRGMv2_2498_12_29
Type: TC
Location: 28929 - 29675 (-)
Type: TC
Location: 28929 - 29675 (-)
Gene ID: HRGMv2_2498_12_30
Type: CAZyme
Location: 29960 - 31477 (+)
Type: CAZyme
Location: 29960 - 31477 (+)
Gene ID: HRGMv2_2498_12_31
Type: CAZyme
Location: 31502 - 33760 (+)
Type: CAZyme
Location: 31502 - 33760 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.