Cluster: HRGMv2_2498_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate: host glycan
- Genome ID: HRGMv2_2498
- CGC Family ID: CGCFAM_00405
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2498_1 | HRGMv2_2498_1_95 | 72459 | 72893 | + | 4.A.6.1.14 |
| CAZyme | HRGMv2_2498_1 | HRGMv2_2498_1_96 | 72905 | 74095 | + | GH88 |
| TC | HRGMv2_2498_1 | HRGMv2_2498_1_97 | 74106 | 74597 | + | 4.A.6.1.14 |
| TC | HRGMv2_2498_1 | HRGMv2_2498_1_98 | 74612 | 75391 | + | 4.A.6.1.14 |
| TC | HRGMv2_2498_1 | HRGMv2_2498_1_99 | 75378 | 76196 | + | 4.A.6.1.14 |
| pfam | HRGMv2_2498_1 | HRGMv2_2498_1_100 | 76196 | 76489 | + | YajC |
| CAZyme | HRGMv2_2498_1 | HRGMv2_2498_1_101 | 76511 | 78412 | + | PL12_1 |
Gene ID: HRGMv2_2498_1_95
Type: TC
Location: 72459 - 72893 (+)
Type: TC
Location: 72459 - 72893 (+)
Gene ID: HRGMv2_2498_1_96
Type: CAZyme
Location: 72905 - 74095 (+)
Type: CAZyme
Location: 72905 - 74095 (+)
Gene ID: HRGMv2_2498_1_97
Type: TC
Location: 74106 - 74597 (+)
Type: TC
Location: 74106 - 74597 (+)
Gene ID: HRGMv2_2498_1_98
Type: TC
Location: 74612 - 75391 (+)
Type: TC
Location: 74612 - 75391 (+)
Gene ID: HRGMv2_2498_1_99
Type: TC
Location: 75378 - 76196 (+)
Type: TC
Location: 75378 - 76196 (+)
Gene ID: HRGMv2_2498_1_100
Type: pfam
Location: 76196 - 76489 (+)
Type: pfam
Location: 76196 - 76489 (+)
Gene ID: HRGMv2_2498_1_101
Type: CAZyme
Location: 76511 - 78412 (+)
Type: CAZyme
Location: 76511 - 78412 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.