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Cluster: HRGMv2_2496_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2496_13 HRGMv2_2496_13_25 25716 27080 - 2.A.1.3.30
TF HRGMv2_2496_13 HRGMv2_2496_13_26 27277 27993 - GntR
CAZyme HRGMv2_2496_13 HRGMv2_2496_13_27 28064 29491 - GH1
pfam HRGMv2_2496_13 HRGMv2_2496_13_28 29501 30241 - adh_short | KR | adh_short_C2
NULL(UNKNOWN) HRGMv2_2496_13 HRGMv2_2496_13_29 30242 30787 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2496_13 HRGMv2_2496_13_30 30784 31620 - 3.A.1.1.27
TC HRGMv2_2496_13 HRGMv2_2496_13_31 31620 32576 - 3.A.1.1.23
STP HRGMv2_2496_13 HRGMv2_2496_13_32 32611 33930 - SBP_bac_1
CAZyme HRGMv2_2496_13 HRGMv2_2496_13_33 34043 34972 - GH113
CAZyme HRGMv2_2496_13 HRGMv2_2496_13_34 35073 36011 + CE7
Gene ID: HRGMv2_2496_13_25
Type: TC
Location: 25716 - 27080 (-)
Gene ID: HRGMv2_2496_13_26
Type: TF
Location: 27277 - 27993 (-)
Gene ID: HRGMv2_2496_13_27
Type: CAZyme
Location: 28064 - 29491 (-)
Gene ID: HRGMv2_2496_13_28
Type: pfam
Location: 29501 - 30241 (-)
Gene ID: HRGMv2_2496_13_29
Type:
Location: 30242 - 30787 (-)
Gene ID: HRGMv2_2496_13_30
Type: TC
Location: 30784 - 31620 (-)
Gene ID: HRGMv2_2496_13_31
Type: TC
Location: 31620 - 32576 (-)
Gene ID: HRGMv2_2496_13_32
Type: STP
Location: 32611 - 33930 (-)
Gene ID: HRGMv2_2496_13_33
Type: CAZyme
Location: 34043 - 34972 (-)
Gene ID: HRGMv2_2496_13_34
Type: CAZyme
Location: 35073 - 36011 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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