Cluster: HRGMv2_2496_CGC1
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 8
- Substrate:
- Genome ID: HRGMv2_2496
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2496_1 | HRGMv2_2496_1_56 | 50613 | 51911 | + | GH25 |
| pfam | HRGMv2_2496_1 | HRGMv2_2496_1_57 | 52039 | 53466 | - | DUF2142 |
| NULL(UNKNOWN) | HRGMv2_2496_1 | HRGMv2_2496_1_58 | 53468 | 55267 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2496_1 | HRGMv2_2496_1_59 | 55296 | 56714 | - | 2.A.66.2.16 |
| pfam | HRGMv2_2496_1 | HRGMv2_2496_1_60 | 56711 | 57841 | - | Amino_oxidase | GLF | NAD_binding_8 |
| CAZyme | HRGMv2_2496_1 | HRGMv2_2496_1_61 | 57841 | 58905 | - | GT113 |
| pfam | HRGMv2_2496_1 | HRGMv2_2496_1_62 | 58968 | 59969 | - | Stealth_CR2 | Stealth_CR3 |
| CAZyme | HRGMv2_2496_1 | HRGMv2_2496_1_63 | 59962 | 61107 | - | GT4 |
| CAZyme | HRGMv2_2496_1 | HRGMv2_2496_1_64 | 61225 | 62271 | - | GT2 |
| pfam | HRGMv2_2496_1 | HRGMv2_2496_1_65 | 62264 | 62626 | - | DUF2304 |
| CAZyme | HRGMv2_2496_1 | HRGMv2_2496_1_66 | 62626 | 63363 | - | GT2 |
| pfam | HRGMv2_2496_1 | HRGMv2_2496_1_67 | 63445 | 65211 | - | RgpF |
| CAZyme | HRGMv2_2496_1 | HRGMv2_2496_1_68 | 65201 | 66157 | - | GT2 |
| pfam | HRGMv2_2496_1 | HRGMv2_2496_1_69 | 66165 | 67541 | - | DUF2142 |
| TC | HRGMv2_2496_1 | HRGMv2_2496_1_70 | 67534 | 68727 | - | 3.A.1.103.5 |
| pfam | HRGMv2_2496_1 | HRGMv2_2496_1_71 | 68742 | 69551 | - | ABC2_membrane |
| CAZyme | HRGMv2_2496_1 | HRGMv2_2496_1_72 | 69548 | 70489 | - | GT2 |
| CAZyme | HRGMv2_2496_1 | HRGMv2_2496_1_73 | 70479 | 71687 | - | GT4 |
Gene ID: HRGMv2_2496_1_56
Type: CAZyme
Location: 50613 - 51911 (+)
Type: CAZyme
Location: 50613 - 51911 (+)
Gene ID: HRGMv2_2496_1_57
Type: pfam
Location: 52039 - 53466 (-)
Type: pfam
Location: 52039 - 53466 (-)
Gene ID: HRGMv2_2496_1_58
Type:
Location: 53468 - 55267 (-)
Type:
Location: 53468 - 55267 (-)
Gene ID: HRGMv2_2496_1_59
Type: TC
Location: 55296 - 56714 (-)
Type: TC
Location: 55296 - 56714 (-)
Gene ID: HRGMv2_2496_1_60
Type: pfam
Location: 56711 - 57841 (-)
Type: pfam
Location: 56711 - 57841 (-)
Gene ID: HRGMv2_2496_1_61
Type: CAZyme
Location: 57841 - 58905 (-)
Type: CAZyme
Location: 57841 - 58905 (-)
Gene ID: HRGMv2_2496_1_62
Type: pfam
Location: 58968 - 59969 (-)
Type: pfam
Location: 58968 - 59969 (-)
Gene ID: HRGMv2_2496_1_63
Type: CAZyme
Location: 59962 - 61107 (-)
Type: CAZyme
Location: 59962 - 61107 (-)
Gene ID: HRGMv2_2496_1_64
Type: CAZyme
Location: 61225 - 62271 (-)
Type: CAZyme
Location: 61225 - 62271 (-)
Gene ID: HRGMv2_2496_1_65
Type: pfam
Location: 62264 - 62626 (-)
Type: pfam
Location: 62264 - 62626 (-)
Gene ID: HRGMv2_2496_1_66
Type: CAZyme
Location: 62626 - 63363 (-)
Type: CAZyme
Location: 62626 - 63363 (-)
Gene ID: HRGMv2_2496_1_67
Type: pfam
Location: 63445 - 65211 (-)
Type: pfam
Location: 63445 - 65211 (-)
Gene ID: HRGMv2_2496_1_68
Type: CAZyme
Location: 65201 - 66157 (-)
Type: CAZyme
Location: 65201 - 66157 (-)
Gene ID: HRGMv2_2496_1_69
Type: pfam
Location: 66165 - 67541 (-)
Type: pfam
Location: 66165 - 67541 (-)
Gene ID: HRGMv2_2496_1_70
Type: TC
Location: 67534 - 68727 (-)
Type: TC
Location: 67534 - 68727 (-)
Gene ID: HRGMv2_2496_1_71
Type: pfam
Location: 68742 - 69551 (-)
Type: pfam
Location: 68742 - 69551 (-)
Gene ID: HRGMv2_2496_1_72
Type: CAZyme
Location: 69548 - 70489 (-)
Type: CAZyme
Location: 69548 - 70489 (-)
Gene ID: HRGMv2_2496_1_73
Type: CAZyme
Location: 70479 - 71687 (-)
Type: CAZyme
Location: 70479 - 71687 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Lactococcus
Species
Lactococcus cremoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.