Cluster: HRGMv2_2493_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2493
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2493_1 | HRGMv2_2493_1_99 | 117186 | 118721 | + | GT4 |
| CAZyme | HRGMv2_2493_1 | HRGMv2_2493_1_100 | 118721 | 120217 | + | GT4 |
| pfam | HRGMv2_2493_1 | HRGMv2_2493_1_101 | 120410 | 121831 | - | TRAM | tRNA_U5-meth_tr |
| TC | HRGMv2_2493_1 | HRGMv2_2493_1_102 | 122312 | 123688 | + | 2.A.26.1.9 |
Gene ID: HRGMv2_2493_1_99
Type: CAZyme
Location: 117186 - 118721 (+)
Type: CAZyme
Location: 117186 - 118721 (+)
Gene ID: HRGMv2_2493_1_100
Type: CAZyme
Location: 118721 - 120217 (+)
Type: CAZyme
Location: 118721 - 120217 (+)
Gene ID: HRGMv2_2493_1_101
Type: pfam
Location: 120410 - 121831 (-)
Type: pfam
Location: 120410 - 121831 (-)
Gene ID: HRGMv2_2493_1_102
Type: TC
Location: 122312 - 123688 (+)
Type: TC
Location: 122312 - 123688 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Limosilactobacillus
Species
Limosilactobacillus sp012843675
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.