Cluster: HRGMv2_2488_CGC9
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2488
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2488_5 | HRGMv2_2488_5_22 | 21839 | 23419 | + | 3.A.1.112.5 |
| TC | HRGMv2_2488_5 | HRGMv2_2488_5_23 | 23419 | 24999 | + | 3.A.1.112.3 |
| pfam | HRGMv2_2488_5 | HRGMv2_2488_5_24 | 25045 | 25401 | - | ArsC |
| peptidase | HRGMv2_2488_5 | HRGMv2_2488_5_25 | 25414 | 26310 | - | S09.UNW |
| CAZyme | HRGMv2_2488_5 | HRGMv2_2488_5_26 | 26803 | 28041 | + | GH25 |
Gene ID: HRGMv2_2488_5_22
Type: TC
Location: 21839 - 23419 (+)
Type: TC
Location: 21839 - 23419 (+)
Gene ID: HRGMv2_2488_5_23
Type: TC
Location: 23419 - 24999 (+)
Type: TC
Location: 23419 - 24999 (+)
Gene ID: HRGMv2_2488_5_24
Type: pfam
Location: 25045 - 25401 (-)
Type: pfam
Location: 25045 - 25401 (-)
Gene ID: HRGMv2_2488_5_25
Type: peptidase
Location: 25414 - 26310 (-)
Type: peptidase
Location: 25414 - 26310 (-)
Gene ID: HRGMv2_2488_5_26
Type: CAZyme
Location: 26803 - 28041 (+)
Type: CAZyme
Location: 26803 - 28041 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus crispatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.