Cluster: HRGMv2_2483_CGC8
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_2483
- CGC Family ID: CGCFAM_00055
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2483_1 | HRGMv2_2483_1_516 | 534894 | 536048 | + | GT4 |
| CAZyme | HRGMv2_2483_1 | HRGMv2_2483_1_517 | 536038 | 536973 | + | GT2 |
| pfam | HRGMv2_2483_1 | HRGMv2_2483_1_518 | 536970 | 537776 | + | ABC2_membrane |
| TC | HRGMv2_2483_1 | HRGMv2_2483_1_519 | 537776 | 538975 | + | 3.A.1.103.5 |
| CAZyme | HRGMv2_2483_1 | HRGMv2_2483_1_520 | 538972 | 540318 | + | GT2 |
| pfam | HRGMv2_2483_1 | HRGMv2_2483_1_521 | 540315 | 542075 | + | RgpF |
| pfam | HRGMv2_2483_1 | HRGMv2_2483_1_522 | 542072 | 544540 | + | Sulfatase |
| TC | HRGMv2_2483_1 | HRGMv2_2483_1_523 | 544560 | 546029 | + | 3.A.7.19.1 |
| NULL(UNKNOWN) | HRGMv2_2483_1 | HRGMv2_2483_1_524 | 546013 | 547305 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2483_1 | HRGMv2_2483_1_525 | 547302 | 548228 | + | GT2 |
| pfam | HRGMv2_2483_1 | HRGMv2_2483_1_526 | 548313 | 548591 | + | GBS_Bsp-like |
| pfam | HRGMv2_2483_1 | HRGMv2_2483_1_527 | 548557 | 549654 | + | CHAP | GBS_Bsp-like | GBS_Bsp-like |
| CAZyme | HRGMv2_2483_1 | HRGMv2_2483_1_528 | 549770 | 552748 | + | GH25 |
Gene ID: HRGMv2_2483_1_516
Type: CAZyme
Location: 534894 - 536048 (+)
Type: CAZyme
Location: 534894 - 536048 (+)
Gene ID: HRGMv2_2483_1_517
Type: CAZyme
Location: 536038 - 536973 (+)
Type: CAZyme
Location: 536038 - 536973 (+)
Gene ID: HRGMv2_2483_1_518
Type: pfam
Location: 536970 - 537776 (+)
Type: pfam
Location: 536970 - 537776 (+)
Gene ID: HRGMv2_2483_1_519
Type: TC
Location: 537776 - 538975 (+)
Type: TC
Location: 537776 - 538975 (+)
Gene ID: HRGMv2_2483_1_520
Type: CAZyme
Location: 538972 - 540318 (+)
Type: CAZyme
Location: 538972 - 540318 (+)
Gene ID: HRGMv2_2483_1_521
Type: pfam
Location: 540315 - 542075 (+)
Type: pfam
Location: 540315 - 542075 (+)
Gene ID: HRGMv2_2483_1_522
Type: pfam
Location: 542072 - 544540 (+)
Type: pfam
Location: 542072 - 544540 (+)
Gene ID: HRGMv2_2483_1_523
Type: TC
Location: 544560 - 546029 (+)
Type: TC
Location: 544560 - 546029 (+)
Gene ID: HRGMv2_2483_1_524
Type:
Location: 546013 - 547305 (+)
Type:
Location: 546013 - 547305 (+)
Gene ID: HRGMv2_2483_1_525
Type: CAZyme
Location: 547302 - 548228 (+)
Type: CAZyme
Location: 547302 - 548228 (+)
Gene ID: HRGMv2_2483_1_526
Type: pfam
Location: 548313 - 548591 (+)
Type: pfam
Location: 548313 - 548591 (+)
Gene ID: HRGMv2_2483_1_527
Type: pfam
Location: 548557 - 549654 (+)
Type: pfam
Location: 548557 - 549654 (+)
Gene ID: HRGMv2_2483_1_528
Type: CAZyme
Location: 549770 - 552748 (+)
Type: CAZyme
Location: 549770 - 552748 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus gallolyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.